Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 1.2e-44 182.6 82 100.0
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 1.2e-34 149.4 79 82.3
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.5e-34 149.1 76 84.2
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 2.0e-34 148.7 76 84.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 3.4e-34 147.9 78 82.1
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 4.4e-34 147.5 78 82.1
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 7.6e-34 146.7 76 82.9
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 9.9e-34 146.4 76 84.2
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.3e-33 146.0 76 82.9
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 3.8e-33 144.4 76 80.3
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 4.9e-33 144.1 78 79.5
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 1.4e-32 142.5 76 80.3
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 1.4e-32 142.5 76 80.3
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 1.4e-32 142.5 76 80.3
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 5.4e-32 140.6 77 80.5
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 7.1e-32 140.2 79 78.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 9.3e-32 139.8 77 79.2
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 9.3e-32 139.8 78 82.1
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.2e-31 139.4 77 77.9
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 1.2e-31 139.4 76 78.9
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.7e-31 138.3 77 77.9
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.7e-31 138.3 75 81.3
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 6.0e-31 137.1 76 77.6
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.0e-30 134.8 77 76.6
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 5.1e-30 134.0 76 75.0
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 5.1e-30 134.0 76 75.0
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 5.1e-30 134.0 82 72.0
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.6e-30 133.7 76 75.0
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 6.6e-30 133.7 77 76.6
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 1.1e-29 132.9 77 74.0
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 1.1e-29 132.9 80 68.8
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.1e-29 132.9 76 73.7
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 1.1e-29 132.9 77 72.7
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.5e-29 132.5 76 69.7
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 2.5e-29 131.7 80 68.8
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 4.3e-29 131.0 71 77.5
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 5.6e-29 130.6 77 72.7
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 5.6e-29 130.6 84 70.2
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 7.3e-29 130.2 84 70.2
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.6e-28 129.0 77 72.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.1e-28 128.6 84 69.0
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 2.1e-28 128.6 84 70.2
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 2.1e-28 128.6 87 65.5
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 4.8e-28 127.5 72 75.0
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 4.8e-28 127.5 85 67.1
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 4.8e-28 127.5 85 67.1
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 4.8e-28 127.5 85 67.1
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 6.2e-28 127.1 79 68.4
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 6.2e-28 127.1 79 68.4
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 8.1e-28 126.7 80 62.5
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-27 125.9 84 66.7
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 84 66.7
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 84 66.7
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 84 66.7
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.4e-27 125.2 74 70.3
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 5.3e-27 124.0 81 63.0
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 5.3e-27 124.0 77 66.2
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.2e-26 122.9 72 72.2
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 1.5e-26 122.5 78 67.9
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 1.5e-26 122.5 78 70.5
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 4.5e-26 120.9 83 62.7
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 4.5e-26 120.9 81 69.1
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 9.9e-26 119.8 84 64.3
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 4.9e-25 117.5 76 60.5
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 1.1e-24 116.3 77 66.2
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.4e-24 115.9 84 61.9
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.4e-24 115.2 80 61.2
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.4e-24 115.2 80 61.2
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.4e-24 115.2 80 61.2
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.4e-24 115.2 77 66.2
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 3.2e-24 114.8 80 62.5
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 3.2e-24 114.8 84 60.7
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 4.2e-24 114.4 77 64.9
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 4.2e-24 114.4 77 64.9
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 5.4e-24 114.0 74 63.5
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.6e-23 112.5 81 65.4
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 2.7e-23 111.7 80 61.2
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 3.5e-23 111.3 76 57.9
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 6.0e-23 110.5 81 64.2
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 7.9e-23 110.2 80 60.0
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 1.3e-22 109.4 81 63.0
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 3.9e-22 107.8 79 55.7
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 6.7e-22 107.1 81 60.5
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 8.7e-22 106.7 69 69.6
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 1.1e-21 106.3 81 61.7
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.5e-21 105.9 77 59.7
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 3.3e-21 104.8 79 54.4
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 7.4e-21 103.6 78 56.4
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 6.1e-07 57.4 47 48.9
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 5.1e-06 54.3 44 52.3


User provided reference genes

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