Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 7.4e-244 847.4 672 100.0
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.0e-104 385.2 667 65.8
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 5.7e-87 326.2 662 59.1
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 3.5e-84 317.0 644 56.5
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.1e-82 312.0 663 58.8
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.7e-81 306.6 668 46.4
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.0e-80 305.4 664 51.5
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 1.8e-80 304.7 635 62.2
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 1.2e-76 292.0 619 47.5
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 2.0e-76 291.2 639 61.5
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.9e-74 284.6 456 58.8
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 4.3e-74 283.5 454 67.6
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 2.1e-73 281.2 455 67.5
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 2.6e-71 274.2 667 57.4
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.6e-68 265.0 470 62.8
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 8.6e-67 259.2 664 52.3
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.9e-66 258.1 452 57.5
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 1.9e-66 258.1 599 58.1
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 7.3e-66 256.1 428 59.1
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 9.5e-66 255.8 452 56.9
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.2e-65 255.4 428 65.2
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 2.1e-65 254.6 451 63.0
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 2.3e-64 251.1 452 46.5
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 3.4e-63 247.3 453 55.2
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.7e-62 245.0 597 55.9
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 8.3e-62 242.7 662 55.0
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.3e-59 234.6 453 58.7
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 3.9e-59 233.8 665 51.3
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 7.3e-58 229.6 437 59.3
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 7.3e-58 229.6 365 72.9
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 7.3e-58 229.6 435 64.1
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.6e-57 228.4 385 61.3
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 2.1e-57 228.0 607 59.1
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 3.6e-57 227.3 399 66.2
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 4.7e-57 226.9 384 53.9
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 6.2e-57 226.5 451 48.8
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 1.8e-56 224.9 207 52.7
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 4.4e-55 220.3 391 59.3
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 6.4e-54 216.5 673 53.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.1e-52 211.5 393 57.8
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 3.0e-51 207.6 426 54.5
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 5.1e-51 206.8 385 62.1
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 1.1e-50 205.7 444 60.1
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.5e-50 205.3 435 52.2
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 1.9e-50 204.9 603 57.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 9.5e-50 202.6 369 68.6
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.6e-49 201.8 393 55.7
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.0e-47 194.9 467 59.1
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 2.9e-46 191.0 608 51.5
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.4e-45 188.7 467 61.2
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 7.1e-45 186.4 438 59.4
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.1e-44 184.9 413 55.7
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 3.5e-44 184.1 154 53.2
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 1.7e-43 181.8 264 39.0
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 2.8e-41 174.5 184 48.9
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 4.7e-41 173.7 593 46.7
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.4e-40 172.2 345 68.7
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 2.4e-40 171.4 671 49.0
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 9.9e-39 166.0 238 38.7
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 2.1e-36 158.3 609 43.2
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 2.7e-36 157.9 162 47.5
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 1.1e-34 152.5 175 42.9
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 3.3e-34 151.0 559 51.7
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.1e-33 148.3 466 51.3
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 2.8e-33 147.9 466 39.7
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.8e-33 147.9 598 45.2
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.2e-31 142.5 460 40.2
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 2.2e-30 138.3 177 38.4
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 2.9e-30 137.9 177 37.9
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.1e-29 136.0 561 48.3
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.4e-29 135.6 452 43.4
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 1.3e-27 129.0 292 59.9
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.3e-27 129.0 107 57.0
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.1e-26 125.9 515 44.7
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 3.3e-26 124.4 506 45.3
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 1.6e-25 122.1 466 29.4
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 1.6e-25 122.1 466 29.4
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 4.0e-24 117.5 467 24.8
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 6.9e-24 116.7 96 57.3
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 9.0e-24 116.3 306 31.7
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 9.0e-24 116.3 244 30.3
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 2.6e-23 114.8 576 35.1
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 3.4e-23 114.4 470 22.8
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 9.9e-23 112.8 468 22.6
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 8.4e-22 109.8 133 39.8
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 1.1e-21 109.4 468 40.0
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 3.2e-21 107.8 594 30.1
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 9.3e-21 106.3 465 40.2
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 3.0e-19 101.3 236 60.6
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.6e-12 79.0 243 24.7
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 8.7e-11 73.2 64 48.4
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 6.3e-09 67.0 177 22.6
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 8.2e-09 66.6 177 22.6
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 1.8e-08 65.5 151 27.8
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 4.1e-08 64.3 152 28.9
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 5.3e-08 63.9 151 28.5
Nn6g33908 Nelumbo nucifera HOM05D007173 ORTHO05D009151 5.3e-08 63.9 174 23.6
COL.COLO4_21446 Corchorus olitorius HOM05D007383 ORTHO05D009254 1.5e-07 62.4 165 23.6
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 4.5e-07 60.8 151 27.2
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 5.9e-07 60.5 152 26.3
CDE09G1117 Ceratophyllum demersum HOM05D007173 ORTHO05D009151 2.2e-06 58.5 182 21.4
Sed0021022 Sechium edule HOM05D005973 ORTHO05D007285 2.2e-06 58.5 132 23.5
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 3.8e-06 57.8 194 25.3
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 3.8e-06 57.8 194 25.3
Thecc.03G003000 Theobroma cacao HOM05D007383 ORTHO05D009254 3.8e-06 57.8 157 25.5
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 6.5e-06 57.0 223 24.2
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 6.5e-06 57.0 119 26.1
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 6.5e-06 57.0 179 25.7
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 8.5e-06 56.6 234 42.7
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 8.5e-06 56.6 178 28.1
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 8.5e-06 56.6 51 49.0
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 8.5e-06 56.6 85 35.3


User provided reference genes

Program Settings