Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 4.4e-121 438.0 220 100.0
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.0e-85 320.5 188 83.0
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.5e-84 316.6 215 72.6
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.5e-84 316.6 215 72.6
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.9e-82 307.8 219 72.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 7.6e-81 304.3 217 72.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.0e-80 303.9 237 65.8
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.7e-80 303.1 224 71.4
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.5e-79 299.3 193 74.1
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.2e-79 298.5 217 68.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.7e-78 295.8 213 67.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.5e-78 295.4 190 73.7
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 3.5e-78 295.4 221 71.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.6e-78 295.0 202 72.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.0e-77 293.9 152 90.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.3e-77 292.7 268 58.2
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 6.7e-77 291.2 227 63.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 8.7e-77 290.8 213 69.5
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.5e-76 290.0 205 73.7
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.5e-76 290.0 228 68.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.5e-76 289.3 159 83.6
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.3e-76 288.5 165 81.8
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 7.4e-76 287.7 153 85.6
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 9.6e-76 287.3 190 74.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.8e-75 285.8 269 58.4
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 3.7e-75 285.4 152 86.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.1e-74 283.9 152 85.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.4e-74 283.5 224 67.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.4e-74 282.7 153 84.3
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.1e-74 282.3 153 84.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 4.1e-74 282.0 216 65.7
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.9e-74 281.2 207 67.1
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.9e-74 281.2 152 86.2
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.2e-73 280.4 152 84.9
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.0e-73 279.6 215 67.4
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.5e-73 278.5 218 64.7
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 5.9e-73 278.1 216 65.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 7.6e-73 277.7 203 69.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.0e-72 277.3 191 71.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.0e-72 277.3 199 67.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-72 276.9 202 64.9
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-72 276.6 202 65.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-72 276.6 169 76.3
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.7e-72 276.6 169 76.3
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.9e-72 275.8 171 76.0
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.8e-72 275.4 202 64.4
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.8e-72 275.4 212 67.5
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 6.5e-72 274.6 181 71.3
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.5e-71 272.7 155 81.3
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.2e-71 272.3 177 72.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.2e-71 272.3 220 64.5
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 7.2e-71 271.2 197 69.0
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 7.2e-71 271.2 229 64.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 9.3e-71 270.8 220 64.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.2e-70 270.4 153 80.4
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 4.6e-70 268.5 185 68.6
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.9e-70 267.7 145 82.1
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.0e-69 267.3 158 81.0
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.0e-69 265.8 215 63.3
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.1e-69 265.0 196 67.3
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 8.7e-69 264.2 178 70.2
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.1e-68 263.8 186 67.7
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 3.3e-68 262.3 212 62.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-67 259.6 191 65.4
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-66 257.3 204 63.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 164 72.0
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.1e-66 255.8 190 68.9
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 5.3e-66 255.0 177 72.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.5e-65 251.9 197 66.0
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.5e-65 251.9 190 65.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.0e-64 250.8 179 65.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.0e-64 250.8 209 62.7
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-64 250.4 166 69.9
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-64 250.0 170 68.2
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.2e-64 249.6 142 80.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-64 249.6 168 68.5
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.9e-64 249.2 148 77.0
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 3.8e-64 248.8 223 61.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-64 248.8 179 64.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.8e-64 248.8 205 62.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 8.5e-64 247.7 139 82.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 8.5e-64 247.7 223 56.5
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.2e-63 245.7 212 57.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 7.2e-63 244.6 176 69.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-61 240.4 205 61.0
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.8e-61 240.0 136 78.7
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.9e-61 238.8 217 57.1
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.5e-60 236.9 129 82.2
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.7e-60 235.0 268 49.6
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.1e-58 230.7 256 50.8
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.4e-58 230.3 131 80.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.4e-58 229.6 187 59.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.1e-58 229.2 221 56.1
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 9.1e-58 227.6 219 53.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 9.1e-58 227.6 180 61.1
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.1e-58 227.6 159 64.2
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-56 224.2 179 59.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-56 224.2 179 59.2
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.7e-56 223.4 137 75.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-56 223.0 209 54.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-56 222.2 191 57.1
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 5.0e-56 221.9 181 61.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 8.5e-56 221.1 162 64.2
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.2e-55 218.8 221 52.5
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 7.2e-55 218.0 214 56.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.2e-54 217.2 169 68.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.2e-54 217.2 202 57.9
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.7e-54 215.3 178 62.4
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.0e-53 214.2 161 67.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-53 213.8 151 62.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.3e-53 213.0 208 51.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.1e-52 210.7 158 58.9
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.1e-52 210.7 158 58.2
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.7e-52 208.4 147 61.2
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 9.7e-52 207.6 137 68.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-51 206.1 153 60.1
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.3e-51 204.9 222 47.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.4e-50 203.8 159 57.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.6e-49 200.3 145 58.6
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.0e-49 199.9 145 58.6
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.6e-49 199.5 211 54.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 2.6e-49 199.5 144 59.7
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-48 197.2 151 57.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 8.5e-48 194.5 145 56.6
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 8.5e-48 194.5 145 56.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.5e-47 191.8 151 55.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.4e-47 191.0 108 76.9
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.2e-46 190.7 145 55.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-46 190.7 145 55.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.1e-46 189.9 145 55.2
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 2.1e-46 189.9 145 55.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-46 189.1 145 55.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.1e-46 188.3 195 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 8.0e-46 188.0 143 55.9
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 5.7e-44 181.8 134 66.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.3e-43 178.3 197 50.8
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.2e-41 174.1 143 49.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.7e-41 172.9 91 82.4
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 2.7e-41 172.9 134 56.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.2e-40 169.9 91 81.3
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.5e-39 166.4 121 57.0
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 3.2e-39 166.0 220 46.4
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 5.5e-39 165.2 140 62.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.2e-39 164.9 160 55.0
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.4e-39 164.5 109 65.1
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 5.2e-37 158.7 213 45.5
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 6.8e-37 158.3 135 62.2
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.6e-36 156.4 147 56.5
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.7e-35 153.7 145 46.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.7e-33 146.4 149 43.6
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.5e-31 140.6 146 52.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.1e-30 136.7 64 93.8
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.8e-30 136.3 145 42.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 3.4e-28 129.4 168 48.2
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 4.1e-26 122.5 65 84.6
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.2e-26 121.3 216 37.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.6e-25 120.6 142 45.8
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 5.9e-25 118.6 139 38.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 3.8e-24 115.9 79 68.4
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 6.4e-19 98.6 56 83.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.9e-17 92.0 58 74.1
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.5e-15 87.4 85 54.1
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.5e-12 77.4 64 56.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.4e-12 75.9 59 66.1
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-10 70.5 50 56.0
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 7.0e-10 68.6 48 56.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 7.0e-10 68.6 48 56.2
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-08 64.3 110 38.2
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.7e-06 55.8 50 62.0
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.7e-06 55.8 50 62.0


User provided reference genes

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