Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 2.2e-160 568.9 298 100.0
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 1.2e-129 466.8 297 83.8
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 1.7e-128 463.0 298 82.6
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 7.3e-127 457.6 298 82.2
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 4.7e-126 454.9 298 81.9
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 5.2e-125 451.4 298 80.2
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 6.8e-125 451.1 298 80.9
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 8.9e-125 450.7 298 81.2
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 1.2e-124 450.3 298 80.9
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 1.5e-124 449.9 298 80.2
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 1.3e-123 446.8 299 81.6
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 4.9e-123 444.9 298 78.9
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 4.9e-123 444.9 298 79.5
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 1.4e-122 443.4 307 76.5
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 1.9e-122 443.0 298 78.5
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 7.1e-122 441.0 299 78.6
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 9.2e-122 440.7 298 77.9
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 9.2e-122 440.7 298 79.9
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 1.2e-121 440.3 300 79.3
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.1e-121 439.5 299 77.3
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 3.5e-121 438.7 299 80.3
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 4.6e-121 438.3 299 77.9
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 7.8e-121 437.6 299 79.6
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 1.7e-120 436.4 300 78.0
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.3e-120 436.0 299 76.9
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 3.9e-120 435.3 300 77.7
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.9e-120 435.3 299 76.6
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 5.1e-120 434.9 299 76.6
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.1e-120 434.9 299 76.9
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 5.1e-120 434.9 299 78.9
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.5e-119 433.3 299 76.3
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 1.5e-119 433.3 300 78.0
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 3.3e-119 432.2 301 75.7
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.3e-119 432.2 299 76.3
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 7.3e-119 431.0 298 77.5
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 2.1e-118 429.5 298 76.5
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 3.6e-118 428.7 299 76.9
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 3.6e-118 428.7 298 76.2
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 6.2e-118 427.9 305 75.7
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 6.2e-118 427.9 298 78.2
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 2.4e-117 426.0 298 76.8
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 2.4e-117 426.0 298 75.8
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 2.4e-117 426.0 298 76.8
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.1e-117 425.6 300 78.0
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 5.2e-117 424.9 298 77.5
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 6.8e-117 424.5 301 77.1
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 6.8e-117 424.5 299 77.6
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 8.9e-117 424.1 298 76.2
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 8.9e-117 424.1 298 77.2
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 1.5e-116 423.3 294 74.8
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 3.4e-116 422.2 299 75.3
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 4.4e-116 421.8 316 72.2
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 5.8e-116 421.4 298 77.2
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 1.3e-115 420.2 298 76.8
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 4.9e-115 418.3 292 77.4
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 4.9e-115 418.3 298 74.5
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.9e-114 416.4 298 75.2
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 1.9e-114 416.4 298 76.5
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 2.4e-114 416.0 298 76.5
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 3.2e-114 415.6 293 77.1
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 3.2e-114 415.6 299 75.9
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 4.2e-114 415.2 299 75.9
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 5.4e-114 414.8 298 76.8
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 9.3e-114 414.1 298 75.8
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 2.1e-113 412.9 298 75.8
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 2.7e-113 412.5 302 74.2
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 7.8e-113 411.0 294 76.9
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 1.3e-112 410.2 298 74.8
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 3.0e-112 409.1 298 74.8
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 1.5e-111 406.8 301 72.8
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 3.3e-111 405.6 298 73.8
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 3.3e-111 405.6 300 74.0
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 7.3e-111 404.4 295 74.6
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 9.6e-111 404.1 301 73.8
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 6.2e-110 401.4 298 71.8
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 2.4e-109 399.4 301 72.4
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.1e-109 399.1 301 72.8
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 3.1e-109 399.1 302 73.8
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 4.0e-109 398.7 298 71.8
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 4.0e-109 398.7 299 73.9
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 5.3e-109 398.3 300 71.3
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.5e-108 396.7 241 84.6
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 2.0e-108 396.4 299 74.2
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 2.6e-108 396.0 301 72.8
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 2.6e-108 396.0 301 72.8
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 2.6e-108 396.0 298 71.8
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 3.4e-108 395.6 301 72.8
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 3.4e-108 395.6 301 72.8
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 3.4e-108 395.6 301 72.8
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 5.8e-108 394.8 298 72.5
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 9.9e-108 394.0 241 85.1
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 1.3e-107 393.7 298 72.5
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 2.2e-107 392.9 302 71.2
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.9e-107 392.5 300 72.3
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 3.8e-107 392.1 252 77.4
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 4.9e-107 391.7 298 72.1
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 1.4e-106 390.2 300 71.7
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 3.2e-106 389.0 299 70.9
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 6.0e-105 384.8 259 78.8
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 3.0e-104 382.5 298 68.1
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 1.5e-103 380.2 303 70.0
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 2.4e-101 372.9 286 71.3
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 3.2e-98 362.5 301 68.8
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 1.6e-97 360.1 235 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-93 345.9 228 78.1
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.0e-92 343.2 205 83.9
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.7e-91 340.1 227 76.7
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 2.2e-91 339.7 230 77.0
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.5e-90 336.3 227 76.2
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 6.7e-88 328.2 228 73.7
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.1e-82 310.8 230 69.1
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 9.3e-82 307.8 230 69.6
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 3.8e-75 285.8 227 65.2
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.6e-73 280.4 203 67.5
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 3.6e-73 279.3 215 73.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 3.5e-60 236.1 137 82.5
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 1.1e-58 231.1 146 78.8
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 3.6e-49 199.5 227 45.4
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 4.7e-49 199.1 208 48.6
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 2.6e-39 166.8 223 40.8
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 3.5e-36 156.4 86 88.4
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 1.3e-35 154.5 89 87.6
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 2.8e-33 146.7 83 88.0
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 5.6e-26 122.5 64 90.6
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 9.9e-07 58.5 86 47.7


User provided reference genes

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