Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 6.6e-80 300.8 171 100.0
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 1.8e-21 106.7 165 49.7
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 2.6e-20 102.8 111 51.4
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 2.7e-17 92.8 123 41.5
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 3.0e-16 89.4 168 40.5
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 1.9e-15 86.7 168 39.3
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 4.3e-15 85.5 168 38.7
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 4.3e-15 85.5 63 61.9
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 7.4e-15 84.7 127 40.2
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 1.3e-14 84.0 161 42.2
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 2.8e-14 82.8 119 42.0
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 2.8e-14 82.8 58 65.5
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 6.2e-14 81.6 161 41.6
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 8.2e-14 81.3 136 38.2
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 1.1e-13 80.9 108 40.7
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 1.8e-13 80.1 60 58.3
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 5.3e-13 78.6 130 35.4
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 2.0e-12 76.6 127 40.2
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.7e-11 73.6 107 46.7
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 2.2e-11 73.2 42 76.2
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 2.2e-11 73.2 111 45.9
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 3.8e-11 72.4 100 47.0
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 3.8e-11 72.4 108 39.8
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 6.5e-11 71.6 56 55.4
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 6.5e-11 71.6 56 55.4
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 8.4e-11 71.2 132 40.2
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.4e-10 70.5 63 50.8
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 1.9e-10 70.1 99 43.4
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 1.9e-10 70.1 123 39.0
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.9e-10 70.1 63 54.0
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 3.2e-10 69.3 129 40.3
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 5.5e-10 68.6 126 36.5
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 1.6e-09 67.0 60 51.7
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 2.1e-09 66.6 109 39.4
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 2.7e-09 66.2 121 38.8
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 3.5e-09 65.9 57 56.1
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 3.5e-09 65.9 46 65.2
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 4.6e-09 65.5 118 39.0
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 4.6e-09 65.5 101 41.6
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 6.1e-09 65.1 132 37.9
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 7.9e-09 64.7 111 43.2
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 1.0e-08 64.3 46 63.0
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 1.3e-08 63.9 133 39.8
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.3e-08 63.9 107 38.3
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 3.0e-08 62.8 131 35.1
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 5.1e-08 62.0 54 55.6
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 1.1e-07 60.8 55 58.2
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 1.1e-07 60.8 139 37.4
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 1.9e-07 60.1 127 39.4
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 3.3e-07 59.3 62 51.6
Thhalv10005106m.g Eutrema salsugineum HOM05D008255 ORTHO05D011943 5.7e-07 58.5 119 36.1
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 1.3e-06 57.4 63 49.2
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 1.6e-06 57.0 105 38.1
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 1.6e-06 57.0 81 37.0
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 1.6e-06 57.0 60 50.0
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 2.8e-06 56.2 56 46.4
AT5G26720 Arabidopsis thaliana HOM05D008255 ORTHO05D011943 6.3e-06 55.1 102 34.3
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 8.2e-06 54.7 47 53.2


User provided reference genes

Program Settings