Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 5.9e-266 921.0 749 100.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.3e-66 258.8 714 33.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 7.6e-64 249.6 754 32.2
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.7e-63 248.4 753 36.1
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.2e-56 225.7 770 38.4
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 6.0e-53 213.4 749 37.0
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.0e-52 212.6 749 39.4
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 4.8e-42 177.2 202 52.0
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.1e-41 174.5 753 40.0
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.3e-39 169.1 740 30.4
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.3e-39 169.1 732 27.9
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.8e-39 167.5 760 37.5
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 1.4e-38 165.6 760 38.7
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.4e-38 165.6 732 27.9
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 2.5e-38 164.9 751 40.9
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.6e-37 162.2 760 31.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.6e-37 160.6 773 28.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 3.0e-36 157.9 309 36.2
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 5.1e-36 157.1 760 32.9
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 6.7e-36 156.8 753 27.4
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.5e-35 155.6 757 25.9
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.5e-35 155.6 751 31.3
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.5e-35 154.8 760 32.8
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-35 154.5 768 38.0
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 9.0e-33 146.4 754 29.2
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 9.0e-33 146.4 752 27.1
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 9.0e-33 146.4 750 39.5
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 1.2e-32 146.0 792 24.1
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.5e-32 145.6 753 39.3
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 2.9e-31 141.4 756 34.5
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 3.8e-31 141.0 753 30.5
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 5.0e-31 140.6 759 27.1
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.0e-31 140.6 758 38.7
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 6.5e-31 140.2 205 44.9
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.5e-30 137.1 758 38.8
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 7.2e-30 136.7 253 38.3
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 3.6e-29 134.4 706 24.4
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 6.1e-29 133.7 756 25.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 7.9e-29 133.3 345 37.7
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.0e-28 132.9 709 24.4
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.8e-28 132.1 205 40.5
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.0e-28 131.3 729 29.6
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 7.4e-27 126.7 760 24.3
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 7.4e-27 126.7 753 29.3
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.2e-26 125.2 756 31.2
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.8e-26 124.0 771 25.6
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.4e-25 122.5 786 26.7
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.3e-25 120.6 753 25.6
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 6.9e-25 120.2 203 42.4
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.9e-25 120.2 758 35.9
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.5e-24 117.5 753 28.2
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 4.5e-24 117.5 758 27.2
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 5.9e-24 117.1 753 28.4
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 5.9e-24 117.1 753 28.4
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.0e-23 116.3 773 23.4
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.3e-23 115.9 758 32.5
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.3e-23 115.9 272 37.1
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.9e-23 114.8 728 22.7
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 6.5e-23 113.6 758 35.5
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 6.5e-23 113.6 735 30.5
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.9e-22 112.1 740 25.3
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 1.9e-22 112.1 730 38.6
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 4.2e-22 110.9 208 38.9
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 2.7e-21 108.2 753 23.6
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 4.7e-21 107.5 359 35.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 6.1e-21 107.1 709 25.8
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.8e-20 105.5 346 29.2
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.3e-20 105.1 203 37.9
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.3e-20 105.1 203 37.4
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.0e-20 104.8 202 35.1
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.9e-20 104.4 750 27.3
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 3.9e-20 104.4 764 30.5
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 3.9e-20 104.4 777 29.3
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 1.1e-19 102.8 208 37.5
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-19 102.8 269 32.3
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.3e-19 101.3 755 33.1
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 9.7e-19 99.8 207 34.8
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.3e-18 99.4 160 42.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 1.7e-18 99.0 203 36.0
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.7e-18 97.8 213 40.4
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 4.8e-18 97.4 713 27.1
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 6.3e-18 97.1 182 40.7
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.1e-17 94.4 147 38.8
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 7.0e-17 93.6 755 33.1
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 7.0e-17 93.6 756 25.1
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 7.0e-17 93.6 163 38.0
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.6e-16 92.4 730 24.4
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 5.9e-16 90.5 270 31.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.9e-16 90.5 204 32.8
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.3e-15 89.4 204 32.4
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 2.2e-15 88.6 229 29.7
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.2e-15 88.6 281 30.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-15 88.6 752 23.4
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 2.9e-15 88.2 750 32.7
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 8.5e-15 86.7 173 39.3
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.1e-14 86.3 252 32.9
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.1e-14 86.3 760 22.8
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.5e-14 85.9 779 25.0
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 2.5e-14 85.1 138 41.3
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.5e-14 85.1 122 46.7
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.2e-14 84.7 760 26.2
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 3.2e-14 84.7 208 30.8
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 3.2e-14 84.7 208 30.8
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.2e-14 84.3 213 30.5
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.5e-14 84.0 134 40.3
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.5e-14 84.0 143 39.9
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.2e-13 82.8 138 33.3
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.6e-13 82.4 138 38.4
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.6e-13 81.3 130 40.8
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 6.1e-13 80.5 760 21.4
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.0e-12 79.7 756 31.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.8e-12 79.0 713 24.0
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 2.3e-12 78.6 270 30.7
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 4.0e-12 77.8 103 41.7
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 5.2e-12 77.4 206 31.6
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.0e-11 75.5 757 33.6
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 7.5e-11 73.6 222 27.9
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 2.8e-10 71.6 101 42.6
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 2.4e-09 68.6 207 29.5
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 4.1e-09 67.8 210 29.0
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 5.3e-09 67.4 226 29.6
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.0e-08 65.5 254 27.6
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.7e-08 65.1 191 29.8
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 3.5e-08 64.7 157 33.8
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.0e-07 63.2 170 28.8
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.3e-07 62.8 744 22.7
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.9e-07 61.6 753 20.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.8e-07 61.2 53 58.5
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.1e-06 59.7 88 39.8
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.5e-06 59.3 121 34.7
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 3.2e-06 58.2 134 31.3
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 4.2e-06 57.8 756 30.8


User provided reference genes

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