Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 3.1e-93 345.1 175 100.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.7e-46 189.9 182 60.4
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.2e-44 183.7 182 56.6
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.7e-43 179.9 184 56.5
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.9e-43 179.1 183 59.0
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.1e-42 177.2 179 55.9
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 9.5e-42 174.1 184 54.3
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 2.1e-41 172.9 181 53.6
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.8e-41 172.6 185 54.1
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.6e-41 172.2 179 58.1
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 8.0e-41 171.0 182 54.4
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.4e-40 170.2 181 53.0
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.8e-40 169.9 181 54.1
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 2.3e-40 169.5 182 56.0
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 4.0e-40 168.7 176 55.7
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 5.2e-40 168.3 180 55.6
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.0e-39 166.4 183 58.5
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.0e-39 166.4 181 53.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.0e-39 166.4 182 54.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.6e-39 166.0 186 53.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.4e-39 165.6 182 54.4
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 4.4e-39 165.2 181 53.0
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.3e-38 163.7 183 52.5
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.3e-38 161.0 185 53.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.1e-37 160.6 185 52.4
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-37 160.6 183 56.8
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.8e-37 159.8 178 52.8
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 4.1e-37 158.7 186 57.5
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 4.1e-37 158.7 180 53.9
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.0e-37 157.9 190 52.1
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 9.2e-37 157.5 183 51.4
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.2e-36 157.1 187 51.9
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.0e-36 156.4 183 50.8
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.6e-36 155.2 181 56.4
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-35 154.1 181 49.2
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-35 154.1 181 49.2
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-35 154.1 181 49.2
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.3e-35 153.7 182 49.5
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.9e-35 152.5 183 51.9
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 5.0e-35 151.8 184 53.3
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.0e-35 151.8 182 51.6
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 6.6e-35 151.4 178 53.4
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.5e-34 150.2 178 51.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.5e-34 149.4 182 52.2
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.6e-34 148.3 182 50.5
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-34 148.3 203 49.3
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 7.3e-34 147.9 182 50.5
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 9.5e-34 147.5 183 52.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 9.5e-34 147.5 183 50.8
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.6e-33 146.7 182 48.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 2.8e-33 146.0 185 48.6
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.8e-33 146.0 183 50.8
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.2e-33 144.8 181 51.9
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.0e-32 144.1 183 51.4
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.8e-32 143.3 183 51.9
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.8e-32 143.3 184 50.0
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.3e-32 142.9 183 48.6
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.3e-32 142.9 179 49.7
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.1e-32 142.5 182 49.5
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 4.0e-32 142.1 182 50.0
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 4.0e-32 142.1 183 50.8
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 5.8e-31 138.3 185 48.1
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 7.5e-31 137.9 188 48.4
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.3e-30 137.1 181 51.9
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.7e-30 135.6 173 52.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.4e-29 133.7 182 47.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.4e-29 132.9 182 45.6
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 5.4e-29 131.7 192 46.4
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 5.4e-29 131.7 170 51.2
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 5.4e-29 131.7 173 51.4
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.4e-29 131.7 185 48.6
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 7.0e-29 131.3 182 47.8
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.2e-28 130.6 179 49.7
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 2.0e-28 129.8 183 46.4
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.6e-28 128.6 170 50.6
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.6e-28 128.6 179 48.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.0e-28 128.3 183 47.0
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.0e-27 127.5 182 48.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.3e-27 127.1 181 48.6
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.9e-27 125.6 183 44.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 6.6e-27 124.8 183 43.7
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-26 124.0 170 49.4
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.5e-26 123.6 182 45.6
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.9e-26 123.2 188 46.8
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.6e-26 121.7 182 45.6
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.2e-25 120.6 189 47.6
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 3.6e-25 119.0 180 45.6
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.7e-25 118.6 173 45.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.8e-24 116.7 180 46.1
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 5.2e-24 115.2 181 44.8
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.2e-23 114.0 99 65.7
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.0e-23 113.2 189 47.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.4e-23 112.5 173 44.5
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 4.4e-23 112.1 183 44.8
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 5.8e-23 111.7 198 44.9
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 9.8e-23 110.9 178 43.8
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.2e-22 109.8 180 45.6
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.2e-22 109.8 180 45.6
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.2e-22 109.8 180 45.6
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 6.4e-22 108.2 109 56.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 6.4e-22 108.2 185 44.9
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 6.4e-22 108.2 185 45.4
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.1e-21 107.5 180 45.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.1e-21 107.5 198 40.9
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.1e-21 107.5 183 44.8
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.4e-21 107.1 170 44.1
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.4e-21 107.1 178 43.3
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 2.4e-21 106.3 170 43.5
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.2e-20 104.0 180 38.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.7e-20 102.8 108 56.5
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 6.0e-20 101.7 181 42.5
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 3.0e-19 99.4 75 70.7
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 5.1e-19 98.6 171 42.1
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.5e-18 96.3 155 45.8
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 7.3e-18 94.7 150 42.0
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.6e-17 92.4 158 41.8
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 6.2e-17 91.7 165 40.6
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 6.2e-17 91.7 109 53.2
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.8e-16 90.1 107 46.7
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.2e-15 87.4 82 56.1
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 4.4e-15 85.5 184 40.2
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 9.9e-15 84.3 153 41.8
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.7e-14 83.6 134 40.3
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.4e-13 79.7 172 41.3
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 7.1e-13 78.2 130 43.1
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 9.2e-13 77.8 160 38.1
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 2.1e-12 76.6 178 34.8
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.7e-12 76.3 178 34.8
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.0e-11 72.8 179 37.4
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 5.1e-11 72.0 137 41.6
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 4.3e-10 68.9 141 32.6
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 7.3e-10 68.2 127 37.0
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-09 67.0 178 32.0
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 3.1e-08 62.8 76 46.1
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.1e-08 62.8 151 37.7
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.1e-08 62.8 178 31.5
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 4.0e-08 62.4 169 33.1
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 5.2e-08 62.0 131 37.4
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 6.8e-08 61.6 59 59.3
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.0e-07 60.1 92 44.6
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.6e-07 59.7 72 47.2


User provided reference genes

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