Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 3.2e-110 401.7 198 100.0
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.3e-87 326.6 197 82.7
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 2.2e-87 325.9 200 81.5
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 3.8e-87 325.1 204 80.9
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 2.4e-86 322.4 200 79.5
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 3.2e-86 322.0 198 80.3
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 3.2e-86 322.0 199 80.4
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.6e-85 319.7 201 78.6
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.0e-84 317.0 200 78.5
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.3e-84 316.6 195 79.5
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 1.3e-84 316.6 200 78.5
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.7e-84 316.2 200 78.5
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 3.0e-84 315.5 200 77.0
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 5.1e-84 314.7 198 79.3
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 6.6e-84 314.3 194 79.9
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.1e-83 313.5 196 76.5
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 3.3e-83 312.0 198 77.8
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 7.3e-83 310.8 200 77.0
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.3e-82 310.1 200 75.0
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 2.8e-82 308.9 198 76.8
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 3.6e-82 308.5 199 75.4
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 6.2e-82 307.8 184 82.1
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 6.2e-82 307.8 200 74.5
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 8.1e-82 307.4 198 75.8
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 2.4e-81 305.8 202 74.8
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 2.4e-81 305.8 200 74.0
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 9.0e-81 303.9 186 80.1
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.5e-80 303.1 217 70.5
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.5e-80 303.1 202 75.7
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 2.0e-80 302.8 199 77.9
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 2.0e-80 302.8 201 73.6
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 3.4e-80 302.0 200 74.5
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.4e-80 301.6 200 74.0
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 4.4e-80 301.6 199 73.9
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 5.8e-80 301.2 200 73.0
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.3e-79 300.1 200 75.5
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 2.2e-79 299.3 195 75.9
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 2.2e-79 299.3 195 75.9
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.9e-79 298.9 196 77.6
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 3.8e-79 298.5 200 72.5
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 3.8e-79 298.5 200 72.5
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 4.9e-79 298.1 200 72.5
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 4.9e-79 298.1 201 74.1
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 6.4e-79 297.7 196 75.5
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 6.4e-79 297.7 200 72.0
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.4e-78 296.6 195 74.9
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 4.2e-78 295.0 187 79.1
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 1.2e-77 293.5 204 71.6
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 3.5e-77 292.0 220 67.3
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 4.6e-77 291.6 200 71.5
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 1.3e-76 290.0 196 73.0
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.7e-76 289.7 200 71.0
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.5e-75 286.6 198 70.2
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 4.3e-75 285.0 200 70.0
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 5.6e-75 284.6 198 70.2
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.6e-74 283.1 200 68.5
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.8e-74 282.3 194 71.1
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.4e-73 280.0 194 70.1
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.4e-73 280.0 195 69.7
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.8e-73 279.6 175 78.9
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 4.0e-73 278.5 200 68.0
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 5.3e-73 278.1 198 69.2
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.3e-71 273.5 221 63.3
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.7e-71 273.1 194 70.6
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 4.9e-71 271.6 194 68.6
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.1e-70 270.4 231 59.7
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.4e-70 270.0 180 76.1
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.9e-70 269.6 185 70.3
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 3.2e-70 268.9 186 69.9
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 5.5e-70 268.1 185 70.3
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.6e-69 266.5 202 66.3
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.1e-69 266.2 189 64.0
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 6.7e-68 261.2 186 70.4
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 9.6e-67 257.3 187 66.8
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 9.6e-67 257.3 187 67.9
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 3.7e-66 255.4 196 64.3
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 8.1e-66 254.2 199 63.3
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 1.8e-65 253.1 163 74.8
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 1.0e-63 247.3 194 63.9
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 1.8e-60 236.5 153 73.9
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 3.0e-60 235.7 153 73.9
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 2.5e-59 232.6 200 61.0
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 2.8e-58 229.2 153 73.9
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 3.1e-57 225.7 191 57.6
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 5.9e-48 194.9 136 72.1
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 5.9e-48 194.9 199 53.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 1.7e-47 193.4 130 74.6
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 2.2e-47 193.0 124 75.8
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 2.2e-47 193.0 124 75.8
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.1e-43 180.6 180 49.4
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 2.0e-43 179.9 202 51.0
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 3.3e-43 179.1 145 66.9
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 3.1e-41 172.6 160 60.0
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 5.3e-41 171.8 122 73.8
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 3.2e-38 162.5 188 42.0
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 5.7e-35 151.8 181 40.3
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 7.4e-35 151.4 125 58.4
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.3e-34 150.6 192 42.2
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.2e-29 134.0 180 45.0
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.7e-29 132.9 115 60.9
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 3.6e-29 132.5 121 52.1
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.6e-24 117.1 88 68.2
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.5e-24 115.9 62 82.3
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 2.9e-23 112.8 84 63.1
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 3.8e-23 112.5 155 45.2
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.7e-21 106.3 71 69.0
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 3.4e-19 99.4 89 58.4
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 4.4e-19 99.0 106 57.5
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 5.7e-19 98.6 84 56.0
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 1.2e-16 90.9 63 69.8
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 5.9e-16 88.6 149 36.2
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 2.5e-14 83.2 157 36.3
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 8.3e-10 68.2 40 72.5
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 1.4e-09 67.4 52 65.4
SGA_v2.0_scaffold62G21353 Striga asiatica HOM05D058974 ORTHO05D402092 4.3e-06 55.8 31 87.1


User provided reference genes

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