Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 9.9e-150 533.5 281 100.0
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 2.5e-60 236.5 256 50.4
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 5.6e-60 235.3 241 51.9
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 1.6e-59 233.8 262 49.2
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 2.3e-58 229.9 261 48.3
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 8.3e-56 221.5 256 47.7
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 1.1e-55 221.1 243 48.1
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 5.4e-55 218.8 262 47.3
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 1.2e-54 217.6 263 47.5
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 1.6e-54 217.2 257 47.1
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 2.7e-54 216.5 244 48.8
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 1.3e-53 214.2 238 47.9
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 2.3e-53 213.4 266 48.1
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 3.0e-53 213.0 221 51.1
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 3.0e-53 213.0 256 46.1
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 5.0e-53 212.2 237 47.3
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 1.5e-52 210.7 267 49.1
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 4.3e-52 209.1 256 43.4
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 7.3e-52 208.4 256 46.5
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 3.1e-50 203.0 271 45.0
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 6.8e-50 201.8 222 49.5
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 8.9e-50 201.4 257 46.7
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 1.2e-49 201.1 276 44.9
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 3.4e-49 199.5 276 45.3
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 2.2e-48 196.8 239 47.3
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 7.8e-46 188.3 239 45.2
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 1.7e-45 187.2 285 40.0
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 5.0e-45 185.7 224 42.9
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 3.3e-44 183.0 260 43.5
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 6.8e-42 175.3 259 44.0
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 2.0e-41 173.7 264 40.5
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 5.8e-41 172.2 268 40.3
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 5.4e-39 165.6 238 40.8
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 1.2e-38 164.5 247 40.9
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 7.8e-38 161.8 221 43.9
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.4e-34 151.0 245 39.2
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 4.1e-31 139.4 262 37.4
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 3.3e-28 129.8 85 60.0
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 1.2e-27 127.9 100 60.0
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 6.9e-26 122.1 93 58.1
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 7.6e-25 118.6 238 33.2
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 2.2e-24 117.1 222 38.3
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 2.9e-24 116.7 214 35.5
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 2.4e-23 113.6 93 51.6
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 5.4e-23 112.5 100 53.0
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 9.3e-23 111.7 108 50.0
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 2.1e-22 110.5 247 32.8
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.5e-20 103.6 135 43.7
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 7.3e-20 102.1 76 59.2
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 3.6e-19 99.8 98 49.0
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 3.6e-19 99.8 210 34.3
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-19 99.4 99 56.6
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 4.8e-19 99.4 254 30.7
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 2.4e-18 97.1 132 40.2
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 3.4e-17 93.2 70 54.3
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 4.2e-15 86.3 64 59.4
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.2e-14 84.7 229 28.4
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 5.1e-13 79.3 74 47.3
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 5.1e-13 79.3 66 54.5
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 5.1e-13 79.3 66 54.5
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 6.7e-13 79.0 64 53.1
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 1.9e-12 77.4 73 49.3
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 1.9e-12 77.4 73 49.3
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 1.9e-12 77.4 73 49.3
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 2.5e-12 77.0 74 48.6
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 3.3e-12 76.6 66 51.5
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 5.6e-12 75.9 76 46.1
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 5.6e-12 75.9 238 26.9
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 5.6e-12 75.9 238 26.9
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 5.6e-12 75.9 72 44.4
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 9.6e-12 75.1 60 55.0
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.3e-11 74.7 57 47.4
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.3e-11 74.7 61 52.5
Glyma.07G233600 Glycine max HOM05D002950 ORTHO05D009601 2.8e-11 73.6 285 28.1
Glyma.17G038600 Glycine max HOM05D002950 ORTHO05D009601 3.7e-11 73.2 272 28.7
Lalb_Chr12g0200711 Lupinus albus HOM05D002950 ORTHO05D009601 6.2e-11 72.4 286 28.3
SEGI_12346 Sequoiadendron giganteum HOM05D002950 ORTHO05D010092 8.1e-11 72.0 244 28.3
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 1.1e-10 71.6 71 45.1
Lj4g0024176 Lotus japonicus HOM05D002950 ORTHO05D009601 1.4e-10 71.2 229 28.4
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 2.4e-10 70.5 235 27.2
Psat0ss1196g0560 Pisum sativum HOM05D002950 ORTHO05D009601 2.4e-10 70.5 267 27.0
arahy.Tifrunner.gnm1.ann1.S2XP9D Arachis hypogaea HOM05D002950 ORTHO05D009601 4.0e-10 69.7 283 29.0
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 5.3e-10 69.3 252 29.4
Cc03_g00300 Coffea canephora HOM05D002950 ORTHO05D009601 6.9e-10 68.9 228 29.8
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 9.0e-10 68.6 285 27.0
arahy.Tifrunner.gnm1.ann1.IY3TI3 Arachis hypogaea HOM05D002950 ORTHO05D009601 1.2e-09 68.2 294 29.3
Phvul.003G119500 Phaseolus vulgaris HOM05D002950 ORTHO05D009601 1.2e-09 68.2 263 28.1
Psat2g114880 Pisum sativum HOM05D003287 ORTHO05D003688 1.2e-09 68.2 239 27.2
TPR.G26727 Trifolium pratense HOM05D003287 ORTHO05D003688 2.0e-09 67.4 241 27.4
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 2.6e-09 67.0 227 28.6
FAN07G0260 Fragaria x ananassa HOM05D003287 ORTHO05D003688 3.4e-09 66.6 233 27.0
FAN22G2046 Fragaria x ananassa HOM05D003287 ORTHO05D003688 3.4e-09 66.6 233 27.0
Medtr5g037310 Medicago truncatula HOM05D003287 ORTHO05D003688 4.5e-09 66.2 239 27.2
VMungo1215G2080 Vigna mungo HOM05D002950 ORTHO05D009601 4.5e-09 66.2 265 26.8
FvH4_4g35530 Fragaria vesca HOM05D003287 ORTHO05D003688 5.8e-09 65.9 233 27.0
TPR.G12622 Trifolium pratense HOM05D002950 ORTHO05D009601 7.6e-09 65.5 266 25.9
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 9.9e-09 65.1 279 26.5
FAN17G0444 Fragaria x ananassa HOM05D003287 ORTHO05D003688 1.3e-08 64.7 233 26.6
Glyma.02G024900 Glycine max HOM05D003287 ORTHO05D003688 1.3e-08 64.7 243 27.2
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 1.7e-08 64.3 226 28.8
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 1.7e-08 64.3 239 26.4
Lj6P796T40 Lonicera japonica HOM05D003287 ORTHO05D003688 2.2e-08 63.9 223 29.6
Solyc05g006700.4 Solanum lycopersicum HOM05D003287 ORTHO05D003688 2.2e-08 63.9 224 26.3
ATR0796G185 Amborella trichopoda HOM05D002950 ORTHO05D009601 2.9e-08 63.5 229 29.3
Lsat_1_v5_gn_3_50580 Lactuca sativa HOM05D003287 ORTHO05D003688 2.9e-08 63.5 239 25.5
DCAR_023384 Daucus carota HOM05D002950 ORTHO05D009601 3.8e-08 63.2 259 29.0
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 4.9e-08 62.8 220 27.3
Sopen05g002650 Solanum pennellii HOM05D003287 ORTHO05D003688 4.9e-08 62.8 221 28.1
Glyma.01G039900 Glycine max HOM05D003287 ORTHO05D003688 6.4e-08 62.4 229 26.6
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 6.4e-08 62.4 238 24.4
RcHm_v2.0_Chr4g0445181 Rosa chinensis HOM05D003287 ORTHO05D003688 6.4e-08 62.4 238 26.9
Solyc01g088500.3 Solanum lycopersicum HOM05D002950 ORTHO05D009601 6.4e-08 62.4 253 27.7
Sopen01g035360 Solanum pennellii HOM05D002950 ORTHO05D009601 6.4e-08 62.4 253 27.7
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 8.4e-08 62.0 216 25.9
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla HOM05D002950 ORTHO05D009601 8.4e-08 62.0 228 28.5
Medtr4g123700 Medicago truncatula HOM05D002950 ORTHO05D009601 8.4e-08 62.0 229 26.6
Oeu022694.1 Olea europaea HOM05D002950 ORTHO05D009601 8.4e-08 62.0 227 30.0
VMungo1215G2363 Vigna mungo HOM05D003287 ORTHO05D003688 8.4e-08 62.0 237 25.7
Gohir.A03G145300 Gossypium hirsutum HOM05D003287 ORTHO05D003688 1.1e-07 61.6 218 28.0
Gorai.005G189100 Gossypium raimondii HOM05D003287 ORTHO05D003688 1.1e-07 61.6 218 28.0
Manes.01G192800 Manihot esculenta HOM05D003287 ORTHO05D003688 1.1e-07 61.6 226 26.5
Peaxi162Scf00026g00214 Petunia axillaris HOM05D003287 ORTHO05D003688 1.1e-07 61.6 221 26.2
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 1.1e-07 61.6 51 54.9
RcHm_v2.0_Chr4g0426711 Rosa chinensis HOM05D002950 ORTHO05D009601 1.1e-07 61.6 248 27.4
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 1.1e-07 61.6 210 25.7
CiPaw.02G071200 Carya illinoinensis HOM05D002950 ORTHO05D009601 1.4e-07 61.2 231 28.6
Ca_04687_v3 Cicer arietinum L. HOM05D003287 ORTHO05D003688 1.4e-07 61.2 239 26.8
Ciclev10005553m.g Citrus clementina HOM05D002950 ORTHO05D009601 1.4e-07 61.2 267 27.0
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 1.4e-07 61.2 235 29.8
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 1.4e-07 61.2 291 25.4
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 1.9e-07 60.8 232 27.6
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 1.9e-07 60.8 218 27.5
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 1.9e-07 60.8 38 57.9
arahy.Tifrunner.gnm1.ann1.IV17LC Arachis hypogaea HOM05D003287 ORTHO05D003688 2.4e-07 60.5 239 28.9
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 3.2e-07 60.1 221 26.2
Phvul.002G080000 Phaseolus vulgaris HOM05D003287 ORTHO05D003688 3.2e-07 60.1 237 25.3
CSS0039777 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 4.2e-07 59.7 232 27.6
Cfa015715 Carpinus fangiana HOM05D002950 ORTHO05D009601 4.2e-07 59.7 233 27.9
FvH4_4g21130 Fragaria vesca HOM05D002950 ORTHO05D009601 4.2e-07 59.7 262 26.7
PSO210G2606 Papaver somniferum HOM05D003287 ORTHO05D003688 4.2e-07 59.7 232 26.7
Rhsim04G0246700 Rhododendron simsii HOM05D002950 ORTHO05D009601 4.2e-07 59.7 227 29.5
CSS0029206 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 5.5e-07 59.3 232 28.0
Cc11_g13740 Coffea canephora HOM05D003287 ORTHO05D003688 5.5e-07 59.3 218 28.4
FAN17G2745 Fragaria x ananassa HOM05D002950 ORTHO05D009601 5.5e-07 59.3 262 26.7
PGR119G1934 Punica granatum HOM05D003287 ORTHO05D003688 5.5e-07 59.3 228 26.3
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 7.1e-07 58.9 223 24.7
ClCG05G006810 Citrullus lanatus HOM05D002950 ORTHO05D009601 7.1e-07 58.9 264 28.4
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 7.1e-07 58.9 235 29.4
MD13G1062800 Malus domestica HOM05D003287 ORTHO05D003688 7.1e-07 58.9 222 27.5
vmacro07994 Vaccinium macrocarpon HOM05D002950 ORTHO05D009601 7.1e-07 58.9 232 28.4
Atru.chr4.3124 Acer truncatum HOM05D002950 ORTHO05D009601 9.3e-07 58.5 249 26.5
CSS0018037 Camellia sinensis var. sinensis HOM05D002950 ORTHO05D009601 9.3e-07 58.5 266 27.8
FAN07G1569 Fragaria x ananassa HOM05D002950 ORTHO05D009601 9.3e-07 58.5 262 26.7
Dinv16734 Davidia involucrata HOM05D003287 ORTHO05D003688 1.2e-06 58.2 230 25.7
Nn4g22993 Nelumbo nucifera HOM05D003287 ORTHO05D003688 1.2e-06 58.2 241 26.6
TAR365G0202 Trochodendron aralioides HOM05D002950 ORTHO05D009601 1.2e-06 58.2 221 29.0
FvH4_4g30030 Fragaria vesca HOM05D003287 ORTHO05D003688 1.6e-06 57.8 233 26.2
FAN12G3100 Fragaria x ananassa HOM05D003287 ORTHO05D003688 1.6e-06 57.8 231 25.1
FAN22G0408 Fragaria x ananassa HOM05D003287 ORTHO05D003688 1.6e-06 57.8 233 26.6
Carub.0001s1160 Capsella rubella HOM05D002950 ORTHO05D006701 2.1e-06 57.4 275 25.5
Dinv29530 Davidia involucrata HOM05D002950 ORTHO05D009601 2.1e-06 57.4 280 26.1
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 2.1e-06 57.4 239 28.9
Lj2g0013263 Lotus japonicus HOM05D003287 ORTHO05D003688 2.1e-06 57.4 245 27.8
Nitab4.5_0000408g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 2.1e-06 57.4 225 25.3
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 2.1e-06 57.4 241 24.9
AL1G23110 Arabidopsis lyrata HOM05D002950 ORTHO05D006701 2.7e-06 57.0 265 25.7
Lsat_1_v5_gn_1_40601 Lactuca sativa HOM05D002950 ORTHO05D009601 2.7e-06 57.0 255 25.9
Prupe.1G286900 Prunus persica HOM05D003287 ORTHO05D003688 2.7e-06 57.0 230 26.5
THA.LOC104809485 Tarenaya hassleriana HOM05D002950 ORTHO05D006701 2.7e-06 57.0 274 25.5
TWI09G0698 Tripterygium wilfordii HOM05D002950 ORTHO05D009601 2.7e-06 57.0 223 27.8
arahy.Tifrunner.gnm1.ann1.AJ34HY Arachis hypogaea HOM05D003287 ORTHO05D003688 4.6e-06 56.2 235 25.5
CsaV3_3G015460 Cucumis sativus L. HOM05D002950 ORTHO05D009601 4.6e-06 56.2 240 27.1
PSO761G0447 Papaver somniferum HOM05D003287 ORTHO05D003688 4.6e-06 56.2 232 26.3
Sp1g10580 Schrenkiella parvula HOM05D002950 ORTHO05D006701 4.6e-06 56.2 291 26.1
GSVIVG01012680001 Vitis vinifera HOM05D002950 ORTHO05D006701 4.6e-06 56.2 274 26.3
Ah.02g131880 Amaranthus hybridus HOM05D003287 ORTHO05D003688 6.0e-06 55.8 218 24.3
AL3G30400 Arabidopsis lyrata HOM05D002950 ORTHO05D009601 6.0e-06 55.8 304 25.3
MSTRG.657 Avicennia marina HOM05D003287 ORTHO05D003688 6.0e-06 55.8 227 25.6
Ciclev10032232m.g Citrus clementina HOM05D003287 ORTHO05D003688 6.0e-06 55.8 223 25.6
QL12p030788 Quercus lobata HOM05D003287 ORTHO05D003688 6.0e-06 55.8 227 28.6
arahy.Tifrunner.gnm1.ann1.CTL4DA Arachis hypogaea HOM05D003287 ORTHO05D003688 7.9e-06 55.5 235 25.5


User provided reference genes

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