Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.0e-236 821.6 461 100.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.4e-201 706.4 462 87.2
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 5.0e-199 698.0 462 87.2
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.1e-196 688.0 462 84.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.7e-196 687.6 462 83.8
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.3e-195 685.3 462 85.3
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 3.3e-195 685.3 462 84.6
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.7e-195 684.5 461 85.0
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 3.7e-194 681.8 462 84.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.1e-193 678.7 460 85.0
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.1e-193 678.3 462 83.3
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.0e-192 676.0 464 82.3
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.5e-192 674.9 462 81.2
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 5.9e-192 674.5 460 83.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 7.7e-192 674.1 461 82.4
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 5.0e-191 671.4 461 83.5
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 9.4e-190 667.2 463 81.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 6.7e-188 661.0 459 80.4
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.0e-187 659.4 460 81.7
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.3e-187 658.7 459 80.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 9.7e-187 657.1 460 80.7
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.2e-186 656.0 462 81.2
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 2.8e-186 655.6 459 82.6
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.8e-186 654.8 460 81.3
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 6.3e-186 654.4 464 75.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 6.3e-186 654.4 462 82.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 8.2e-186 654.1 459 81.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.2e-186 654.1 459 79.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.4e-185 653.3 463 81.6
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.8e-185 652.9 463 81.2
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.8e-185 652.9 462 79.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 3.1e-185 652.1 459 81.7
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.1e-185 652.1 459 79.7
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.0e-184 649.4 459 81.7
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 3.5e-184 648.7 462 79.9
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.0e-183 647.1 459 81.3
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.7e-183 646.4 462 80.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.7e-183 646.4 458 80.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 6.5e-183 644.4 458 73.8
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 6.5e-183 644.4 458 73.8
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 6.5e-183 644.4 459 81.5
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 8.5e-183 644.0 461 78.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.5e-182 643.3 462 80.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.5e-182 643.3 454 80.8
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 3.2e-182 642.1 466 79.0
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 7.2e-182 641.0 440 84.3
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 9.4e-182 640.6 462 79.9
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 3.6e-181 638.6 462 79.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 6.1e-181 637.9 503 69.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 6.1e-181 637.9 460 78.7
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 79.0
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 8.0e-181 637.5 460 78.9
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 79.4
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 79.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.8e-180 636.3 460 79.8
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.3e-180 636.0 462 79.9
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 3.0e-180 635.6 462 80.3
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 6.7e-180 634.4 462 79.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 8.8e-180 634.0 465 79.1
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.6e-179 632.5 462 78.4
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.7e-179 631.3 462 79.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.2e-178 629.4 462 79.4
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.2e-178 627.5 461 78.1
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.8e-177 626.3 462 76.8
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.1e-177 624.0 464 78.4
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.0e-175 620.5 464 77.8
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.0e-175 620.5 462 77.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-175 620.2 462 75.8
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 6.5e-175 617.8 493 74.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.1e-174 617.1 459 77.1
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.5e-174 616.7 462 77.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 7.2e-174 614.4 459 77.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.7e-173 611.7 460 77.2
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 6.1e-173 611.3 460 77.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.0e-172 610.5 459 76.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 5.2e-172 608.2 483 73.1
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 9.1e-169 597.4 476 72.9
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.9e-168 594.7 462 76.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.7e-168 594.3 462 75.3
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-167 593.6 462 75.3
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.0e-167 591.7 551 67.3
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.5e-166 590.1 465 67.7
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.5e-166 589.3 463 73.2
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.2e-166 588.6 462 75.3
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 5.2e-164 581.6 458 75.3
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.8e-164 581.3 462 74.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-163 580.5 459 73.9
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 3.4e-163 578.9 461 72.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 4.4e-163 578.6 458 75.1
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.3e-162 577.0 458 74.9
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.7e-162 575.5 458 74.2
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-162 575.5 462 73.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 8.3e-162 574.3 464 73.1
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 9.2e-161 570.9 386 75.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 9.2e-161 570.9 387 76.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.6e-160 570.1 462 72.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.0e-160 569.7 462 67.1
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.8e-159 565.5 386 75.4
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.0e-157 557.8 388 75.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 6.8e-156 554.7 463 63.5
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 6.4e-154 548.1 462 70.1
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 7.0e-153 544.7 387 73.4
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 7.0e-153 544.7 459 71.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.7e-151 540.0 401 79.1
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.9e-151 538.9 458 68.8
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 6.6e-151 538.1 460 68.5
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 6.0e-144 515.0 496 65.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.1e-140 502.7 462 61.9
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.2e-139 500.7 465 65.2
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 7.5e-139 498.0 464 65.3
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 6.4e-138 495.0 384 75.5
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 8.3e-138 494.6 461 67.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 4.2e-121 439.1 460 58.5
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.5e-118 430.6 464 54.5
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.8e-116 423.7 365 63.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.7e-106 390.6 299 67.9
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 6.7e-103 378.6 461 51.0
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.2e-98 363.6 317 65.3
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-82 310.8 290 69.7
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.2e-69 265.4 405 42.0
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.3e-66 258.1 389 39.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.8e-61 239.6 242 55.0
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-57 228.4 189 68.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 4.5e-51 206.5 505 37.4
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 5.5e-49 199.5 162 66.7
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.3e-47 194.1 399 31.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.5e-46 191.4 150 67.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.0e-44 182.6 123 74.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.0e-42 178.7 134 69.4
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.3e-39 167.5 509 33.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.5e-38 164.9 121 76.0
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.7e-35 154.1 226 45.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.1e-28 130.2 220 40.9
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.0e-26 124.0 94 70.2
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 7.5e-22 109.4 68 85.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 2.7e-19 100.9 101 85.1
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.5e-19 100.5 107 57.0
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 8.6e-18 95.9 55 90.9
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 2.9e-13 80.9 111 47.7
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 6.4e-13 79.7 59 69.5
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.7e-11 74.3 60 61.7
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 5.1e-10 70.1 49 83.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 5.1e-10 70.1 108 44.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 8.7e-10 69.3 62 59.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.9e-09 68.2 61 57.4
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 4.3e-09 67.0 65 52.3
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 4.3e-09 67.0 97 46.4
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 8.1e-08 62.8 406 21.2
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.1e-07 62.4 409 21.0
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 1.4e-07 62.0 406 20.7
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.4e-07 61.2 408 20.8
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 4.4e-06 57.0 254 26.0
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.4e-06 57.0 60 53.3
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 7.6e-06 56.2 259 24.3
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 7.6e-06 56.2 417 21.8
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 9.9e-06 55.8 411 20.7
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 9.9e-06 55.8 249 24.5
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 9.9e-06 55.8 249 24.5


User provided reference genes

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