Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1105 Cannabis sativa HOM05D003656 ORTHO05D004211 1.0e-39 166.4 90 100.0
TAR623G1327 Trochodendron aralioides HOM05D003656 ORTHO05D004211 9.0e-12 73.6 84 53.6
CiPaw.10G136100 Carya illinoinensis HOM05D003656 ORTHO05D004211 4.4e-11 71.2 84 52.4
CiPaw.09G178500 Carya illinoinensis HOM05D003656 ORTHO05D004211 7.6e-11 70.5 84 52.4
Cfa017524 Carpinus fangiana HOM05D003656 ORTHO05D004211 2.2e-10 68.9 84 50.0
Haze_20625 Corylus avellana HOM05D003656 ORTHO05D004211 2.2e-10 68.9 84 50.0
Haze_20628 Corylus avellana HOM05D003656 ORTHO05D004211 2.2e-10 68.9 84 50.0
GSVIVG01025648001 Vitis vinifera HOM05D003656 ORTHO05D004211 8.4e-10 67.0 84 47.6
Glyma.03G179000 Glycine max HOM05D003656 ORTHO05D004211 1.1e-09 66.6 84 51.2
Duzib128G1560 Durio zibethinus HOM05D003656 ORTHO05D004211 1.4e-09 66.2 84 47.6
Lj1g0024655 Lotus japonicus HOM05D003656 ORTHO05D004211 1.9e-09 65.9 84 51.2
Nn2g10711 Nelumbo nucifera HOM05D003656 ORTHO05D004211 2.4e-09 65.5 84 50.0
Gohir.A09G151300 Gossypium hirsutum HOM05D003656 ORTHO05D004211 4.2e-09 64.7 84 47.6
Phvul.007G107500 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 4.2e-09 64.7 84 48.8
Glyma.13G138200 Glycine max HOM05D003656 ORTHO05D004211 5.4e-09 64.3 84 50.0
Gohir.D09G146900 Gossypium hirsutum HOM05D003656 ORTHO05D004211 9.3e-09 63.5 84 46.4
Gorai.006G168100 Gossypium raimondii HOM05D003656 ORTHO05D004211 9.3e-09 63.5 84 46.4
TAR369G0518 Trochodendron aralioides HOM05D003656 ORTHO05D004211 9.3e-09 63.5 62 62.9
Lalb_Chr02g0156271 Lupinus albus HOM05D003656 ORTHO05D004211 1.6e-08 62.8 83 50.6
TAR633G2048 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.6e-08 62.8 62 61.3
arahy.Tifrunner.gnm1.ann1.5V2EV5 Arachis hypogaea HOM05D003656 ORTHO05D004211 2.1e-08 62.4 83 45.8
arahy.Tifrunner.gnm1.ann1.FC0UQU Arachis hypogaea HOM05D003656 ORTHO05D004211 2.1e-08 62.4 83 45.8
Nn2g13031 Nelumbo nucifera HOM05D003656 ORTHO05D004211 2.1e-08 62.4 84 48.8
CsaV3_6G039400 Cucumis sativus L. HOM05D003656 ORTHO05D004211 2.7e-08 62.0 84 47.6
Ciclev10013218m.g Citrus clementina HOM05D003656 ORTHO05D004211 3.5e-08 61.6 84 46.4
Dinv32777 Davidia involucrata HOM05D003656 ORTHO05D004211 4.6e-08 61.2 63 63.5
Hma1.2p1_0111F.1_g054020 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 6.0e-08 60.8 74 54.1
Potri.006G130200 Populus trichocarpa HOM05D003656 ORTHO05D004211 6.0e-08 60.8 84 51.2
GSVIVG01025155001 Vitis vinifera HOM05D003656 ORTHO05D004211 6.0e-08 60.8 70 48.6
Thecc.05G056100 Theobroma cacao HOM05D003656 ORTHO05D004211 7.8e-08 60.5 53 64.2
Eucgr.A01168 Eucalyptus grandis HOM05D003656 ORTHO05D004211 1.3e-07 59.7 84 45.2
MBI02_g25821_MAGBIO Magnolia biondii HOM05D003656 ORTHO05D004211 1.7e-07 59.3 58 62.1
Medtr7g100880 Medicago truncatula HOM05D003656 ORTHO05D004211 1.7e-07 59.3 84 48.8
CSS0018024 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 2.3e-07 58.9 85 49.4
ClCG04G008890 Citrullus lanatus HOM05D003656 ORTHO05D004211 2.3e-07 58.9 79 49.4
MELO3C009327.2 Cucumis melo HOM05D003656 ORTHO05D004211 2.3e-07 58.9 71 50.7
Manes.08G004601 Manihot esculenta HOM05D003656 ORTHO05D004211 2.3e-07 58.9 84 42.9
Pp3c14_22690 Physcomitrium patens HOM05D003656 ORTHO05D004211 2.3e-07 58.9 61 52.5
C05p58400 Brassica napus HOM05D003656 ORTHO05D004211 3.0e-07 58.5 49 71.4
TPR.G18279 Trifolium pratense HOM05D003656 ORTHO05D004211 3.0e-07 58.5 84 45.2
Sed0008432 Sechium edule HOM05D003656 ORTHO05D004211 3.9e-07 58.2 62 54.8
BcaC05g29696 Brassica carinata HOM05D003656 ORTHO05D004211 5.1e-07 57.8 49 71.4
ClCG10G020440 Citrullus lanatus HOM05D003656 ORTHO05D004211 5.1e-07 57.8 53 62.3
CsaV3_3G035680 Cucumis sativus L. HOM05D000026 ORTHO05D001292 5.1e-07 57.8 53 62.3
Dinv37267 Davidia involucrata HOM05D003656 ORTHO05D004211 5.1e-07 57.8 85 51.8
Gohir.D04G114700 Gossypium hirsutum HOM05D003656 ORTHO05D004211 5.1e-07 57.8 53 62.3
AUR62025008 Chenopodium quinoa HOM05D003656 ORTHO05D004211 6.6e-07 57.4 53 62.3
Gohir.A01G216200 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.6e-07 57.4 53 62.3
Gohir.D01G205000 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.6e-07 57.4 53 62.3
Gorai.002G249300 Gossypium raimondii HOM05D003656 ORTHO05D004211 6.6e-07 57.4 53 62.3
Lalb_Chr25g0289191 Lupinus albus HOM05D003656 ORTHO05D004211 6.6e-07 57.4 53 58.5
Nitab4.5_0003871g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 6.6e-07 57.4 75 50.7
Actinidia13096 Actinidia chinensis HOM05D003656 ORTHO05D004211 8.7e-07 57.0 85 49.4
Duzib093G1390 Durio zibethinus HOM05D003656 ORTHO05D004211 8.7e-07 57.0 53 64.2
Gohir.A04G075600 Gossypium hirsutum HOM05D003656 ORTHO05D004211 8.7e-07 57.0 53 62.3
Gorai.009G419300 Gossypium raimondii HOM05D003656 ORTHO05D004211 8.7e-07 57.0 53 62.3
HanXRQChr02g0052001 Helianthus annuus HOM05D003656 ORTHO05D004211 8.7e-07 57.0 63 50.8
Hma1.2p1_0614F.1_g189580 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 8.7e-07 57.0 57 61.4
QL04p031290 Quercus lobata HOM05D003656 ORTHO05D004211 8.7e-07 57.0 84 48.8
QL07p045029 Quercus lobata HOM05D003656 ORTHO05D004211 8.7e-07 57.0 84 48.8
Medtr7g100905 Medicago truncatula HOM05D003656 ORTHO05D004211 1.1e-06 56.6 78 48.7
Nitab4.5_0008568g0020 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.1e-06 56.6 73 47.9
TPR.G18268 Trifolium pratense HOM05D003656 ORTHO05D004211 1.1e-06 56.6 76 48.7
Ah.01g015060 Amaranthus hybridus HOM05D003656 ORTHO05D004211 1.5e-06 56.2 53 58.5
Glyma.19G179700 Glycine max HOM05D003656 ORTHO05D004211 1.5e-06 56.2 70 47.1
HanXRQChr13g0399601 Helianthus annuus HOM05D003656 ORTHO05D004211 1.5e-06 56.2 63 50.8
Medtr7g100890 Medicago truncatula HOM05D001219 ORTHO05D001017 1.5e-06 56.2 62 56.5
Phvul.001G175700 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 1.5e-06 56.2 84 46.4
SEGI_21131 Sequoiadendron giganteum HOM05D003656 ORTHO05D004211 1.5e-06 56.2 53 58.5
Actinidia05263 Actinidia chinensis HOM05D000190 ORTHO05D000113 1.9e-06 55.8 75 53.3
AL3G20960 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 1.9e-06 55.8 48 66.7
AL5G34280 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 1.9e-06 55.8 66 51.5
A03p35840 Brassica napus HOM05D003656 ORTHO05D004211 1.9e-06 55.8 52 63.5
Cc06_g03710 Coffea canephora HOM05D003656 ORTHO05D004211 1.9e-06 55.8 77 46.8
Duzib106G1222 Durio zibethinus HOM05D003656 ORTHO05D004211 1.9e-06 55.8 53 60.4
ECA233G0967 Erigeron canadensis HOM05D003656 ORTHO05D004211 1.9e-06 55.8 53 58.5
Lsat_1_v5_gn_6_30301 Lactuca sativa HOM05D003656 ORTHO05D004211 1.9e-06 55.8 53 58.5
TWI53G0682 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 1.9e-06 55.8 66 53.0
Lj5g0004266 Lotus japonicus HOM05D003656 ORTHO05D004211 3.3e-06 55.1 49 63.3
Psat0s1011g0080 Pisum sativum HOM05D003656 ORTHO05D004211 3.3e-06 55.1 84 45.2
Psat3g043880 Pisum sativum HOM05D003656 ORTHO05D004211 3.3e-06 55.1 78 46.2
AT3G09735 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 4.3e-06 54.7 48 64.6
A07p21590 Brassica napus HOM05D003656 ORTHO05D004211 4.3e-06 54.7 64 53.1
BolC6t37304H Brassica oleracea HOM05D003656 ORTHO05D004211 4.3e-06 54.7 64 53.1
CSS0043834 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 4.3e-06 54.7 85 47.1
Manes.09G076337 Manihot esculenta HOM05D003656 ORTHO05D004211 4.3e-06 54.7 84 41.7
Mapoly0048s0104 Marchantia polymorpha HOM05D003656 ORTHO05D004211 4.3e-06 54.7 53 54.7
AT3G53370 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 5.6e-06 54.3 66 50.0
CARHR084160 Cardamine hirsuta HOM05D003656 ORTHO05D004211 5.6e-06 54.3 49 69.4
CDE04G2181 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 5.6e-06 54.3 53 64.2
A05p39380 Brassica napus HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
BolC5t34493H Brassica oleracea HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
BraA03t12757Z Brassica rapa HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
BraA05t22719Z Brassica rapa HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
Carub.0003s0883 Capsella rubella HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
CAN.G933.3 Capsicum annuum HOM05D003656 ORTHO05D004211 7.3e-06 53.9 53 58.5
Thhalv10021874m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
Oeu014968.1 Olea europaea HOM05D003656 ORTHO05D000397 7.3e-06 53.9 53 58.5
Sp3g08080 Schrenkiella parvula HOM05D003656 ORTHO05D004211 7.3e-06 53.9 38 76.3
Sopen10g035430 Solanum pennellii HOM05D003656 ORTHO05D004211 7.3e-06 53.9 53 58.5
BraA04t16321Z Brassica rapa HOM05D000026 ORTHO05D001292 9.6e-06 53.5 66 51.5
PGSC0003DMG401017590 Solanum tuberosum HOM05D003656 ORTHO05D004211 9.6e-06 53.5 53 58.5


User provided reference genes

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