Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 2.1e-41 171.8 80 100.0
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 8.2e-33 143.3 81 82.7
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 5.3e-32 140.6 81 79.0
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 9.0e-32 139.8 81 79.0
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 77.8
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.3e-30 136.0 81 74.1
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 75.3
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 5.0e-30 134.0 81 75.3
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 6.5e-30 133.7 81 77.8
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 8.5e-30 133.3 81 76.5
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 76.5
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 75.3
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.4e-29 132.5 80 76.2
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.4e-29 132.5 80 72.5
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.4e-29 132.5 80 72.5
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 1.9e-29 132.1 80 75.0
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.9e-29 132.1 80 75.0
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.9e-29 132.1 80 75.0
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.9e-29 132.1 80 75.0
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.2e-29 131.3 81 75.3
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 3.2e-29 131.3 81 75.3
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 3.2e-29 131.3 81 75.3
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.2e-29 131.0 81 72.8
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 4.2e-29 131.0 81 74.1
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 4.2e-29 131.0 80 75.0
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 4.2e-29 131.0 81 74.1
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 9.4e-29 129.8 81 74.1
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 9.4e-29 129.8 81 76.5
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 74.1
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-28 129.4 80 73.8
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 75.3
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 75.3
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 74.1
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 75.3
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 2.1e-28 128.6 80 72.5
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 2.1e-28 128.6 80 72.5
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 72.8
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 72.8
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 72.8
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 71.6
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 71.6
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 70.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 3.9e-27 124.4 81 72.8
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 3.9e-27 124.4 81 71.6
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 5.1e-27 124.0 81 70.4
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 8.8e-27 123.2 81 66.7
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.1e-26 122.9 81 69.1
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.1e-26 122.9 81 71.6
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.1e-26 122.9 81 66.7
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 70.4
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 70.4
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.3e-26 121.3 80 71.2
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 4.3e-26 120.9 81 66.7
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 71.6
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 69.1
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 66.7
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 9.7e-26 119.8 82 72.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 9.7e-26 119.8 82 70.7
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 71.6
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 67.9
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.8e-25 118.2 81 67.9
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 69.1
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 6.3e-25 117.1 81 66.7
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 67.9
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 1.1e-24 116.3 82 64.6
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 63.0
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 66.7
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 63.0
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 5.3e-24 114.0 79 68.4
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 63.0
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 63.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 63.0
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 2.6e-23 111.7 81 61.7
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 2.6e-23 111.7 81 61.7
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 1.0e-22 109.8 80 60.0
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.3e-22 109.4 80 60.0
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.2e-22 108.6 80 60.0
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.2e-22 108.6 80 60.0
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.2e-22 108.6 80 60.0
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.2e-22 108.6 80 60.0
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 5.0e-22 107.5 83 62.7
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 6.5e-22 107.1 80 58.8
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.4e-21 105.9 81 61.7
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.4e-21 105.9 81 61.7
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 61.7
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 63.0
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 3.2e-21 104.8 81 61.7
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 60.8
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 8.8e-19 96.7 59 74.6
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.5e-18 95.9 79 60.8
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 2.0e-18 95.5 78 52.6
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 5.7e-18 94.0 57 71.9
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 7.4e-18 93.6 60 68.3
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 7.4e-18 93.6 79 54.4
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.2e-17 92.0 62 67.7
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 1.2e-15 86.3 57 64.9
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 2.0e-15 85.5 81 50.6
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 5.9e-15 84.0 57 61.4
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 5.9e-15 84.0 59 69.5
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 1.0e-14 83.2 79 46.8
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 2.2e-14 82.0 59 67.8
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 3.8e-14 81.3 76 48.7
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 4.2e-13 77.8 57 59.6
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 9.4e-13 76.6 79 44.3
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 4.7e-12 74.3 47 72.3
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 4.7e-12 74.3 47 72.3
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 6.7e-11 70.5 77 50.6
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 3.3e-10 68.2 46 65.2
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 2.2e-09 65.5 41 70.7
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 2.2e-09 65.5 65 50.8
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.2e-07 59.7 43 55.8


User provided reference genes

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