Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.6e-25 118.6 60 100.0
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 1.7e-19 98.6 58 81.0
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 3.0e-19 97.8 58 81.0
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 1.9e-18 95.1 58 75.9
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.6e-18 93.6 56 82.1
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.6e-18 93.6 56 82.1
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.6e-18 93.6 56 82.1
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 9.5e-18 92.8 59 74.6
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 2.1e-17 91.7 55 80.0
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.8e-17 91.3 58 74.1
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 3.6e-17 90.9 54 85.2
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 6.2e-17 90.1 58 75.9
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 6.2e-17 90.1 58 75.9
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 1.4e-16 89.0 59 76.3
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.4e-16 89.0 59 74.6
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.8e-16 88.6 59 72.9
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.8e-16 88.6 59 74.6
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.8e-16 88.6 59 74.6
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 2.3e-16 88.2 59 69.5
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 5.2e-16 87.0 56 75.0
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 8.9e-16 86.3 53 75.5
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 8.9e-16 86.3 58 70.7
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 1.5e-15 85.5 59 72.9
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.5e-15 85.5 58 75.9
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 2.0e-15 85.1 58 72.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 2.6e-15 84.7 56 73.2
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 3.4e-15 84.3 59 69.5
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 4.4e-15 84.0 56 69.6
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 5.8e-15 83.6 59 66.1
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 5.8e-15 83.6 58 70.7
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 7.5e-15 83.2 56 71.4
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 7.5e-15 83.2 56 71.4
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.3e-14 82.4 59 69.5
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.3e-14 82.4 59 66.1
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.7e-14 82.0 58 69.0
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 1.7e-14 82.0 58 69.0
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 1.7e-14 82.0 59 69.5
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 1.7e-14 82.0 59 67.8
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 2.9e-14 81.3 58 69.0
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 2.9e-14 81.3 59 66.1
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 3.7e-14 80.9 56 66.1
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 3.7e-14 80.9 56 66.1
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 3.7e-14 80.9 57 66.7
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 4.9e-14 80.5 55 67.3
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 6.4e-14 80.1 56 67.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 6.4e-14 80.1 53 71.7
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 8.3e-14 79.7 60 65.0
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 8.3e-14 79.7 59 64.4
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 1.4e-13 79.0 57 63.2
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 1.4e-13 79.0 58 67.2
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 2.4e-13 78.2 51 68.6
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 3.2e-13 77.8 57 66.7
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 5.4e-13 77.0 53 71.7
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 9.2e-13 76.3 51 68.6
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 9.2e-13 76.3 51 68.6
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 9.2e-13 76.3 51 68.6
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 9.2e-13 76.3 56 64.3
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 9.2e-13 76.3 51 64.7
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 1.2e-12 75.9 57 63.2
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 2.1e-12 75.1 57 59.6
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 2.7e-12 74.7 59 61.0
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 4.6e-12 73.9 58 58.6
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.0e-11 72.8 62 54.8
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 56 60.7
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 56 60.7
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.3e-11 72.4 46 65.2
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.3e-11 72.4 46 65.2
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 3.0e-11 71.2 59 61.0
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 6.6e-11 70.1 46 71.7
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 1.9e-10 68.6 49 61.2
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.9e-10 68.6 46 63.0
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 3.3e-10 67.8 46 63.0
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 5.6e-10 67.0 57 57.9
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 9.5e-10 66.2 53 62.3
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 9.5e-10 66.2 43 69.8
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 9.5e-10 66.2 41 75.6
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 9.5e-10 66.2 61 59.0
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 3.6e-09 64.3 42 66.7
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 1.4e-08 62.4 55 50.9
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 1.2e-07 59.3 44 59.1
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 3.4e-07 57.8 43 55.8


User provided reference genes

Program Settings