Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.2e-175 619.8 331 100.0
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.1e-143 512.7 340 74.7
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 8.1e-143 510.8 340 74.4
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.6e-141 505.8 267 89.1
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 7.6e-141 504.2 265 89.4
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.3e-140 503.4 265 87.5
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.2e-140 502.7 265 87.2
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.9e-140 502.3 328 75.0
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.9e-140 502.3 265 87.2
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 4.9e-140 501.5 265 87.2
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 6.4e-140 501.1 265 86.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.1e-139 500.4 267 88.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.9e-139 499.6 341 75.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.9e-139 499.6 336 74.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.4e-139 499.2 267 88.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 5.4e-139 498.0 265 88.3
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.2e-138 496.9 263 86.3
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-138 496.9 265 87.9
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.6e-138 496.5 282 83.7
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.1e-138 496.1 276 83.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.7e-138 495.7 332 77.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.7e-138 495.7 276 83.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 4.6e-138 495.0 265 86.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 7.8e-138 494.2 263 86.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.8e-138 494.2 338 72.2
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.3e-137 493.4 265 86.4
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.7e-137 493.0 334 72.2
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.7e-137 493.0 334 72.2
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.3e-137 492.7 261 87.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.9e-137 491.9 279 82.8
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 5.1e-137 491.5 264 87.1
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 6.6e-137 491.1 337 72.4
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.5e-136 490.0 338 72.8
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.9e-136 489.6 333 71.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.5e-136 489.2 263 86.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.3e-136 488.8 282 83.3
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 3.3e-136 488.8 338 73.4
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.3e-136 488.4 261 86.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 5.6e-136 488.0 263 86.7
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 5.6e-136 488.0 263 85.9
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.6e-136 488.0 337 71.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 5.6e-136 488.0 263 86.3
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 7.3e-136 487.6 338 72.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 7.3e-136 487.6 267 84.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 7.3e-136 487.6 293 80.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.2e-135 486.9 261 86.6
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.2e-135 486.9 334 72.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.6e-135 486.5 342 70.8
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.1e-135 486.1 263 85.2
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.1e-135 486.1 330 72.1
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.1e-135 486.1 275 81.8
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.8e-135 485.7 265 84.9
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.8e-135 485.7 263 85.6
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.8e-135 485.7 347 70.9
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.8e-135 485.7 261 85.1
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 4.7e-135 485.0 332 71.4
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 4.7e-135 485.0 263 84.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 6.2e-135 484.6 263 85.6
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.2e-135 484.6 263 86.3
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.4e-134 482.6 286 80.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.1e-134 482.3 263 84.4
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.1e-134 482.3 265 83.4
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 5.2e-134 481.5 284 79.6
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.2e-134 481.5 265 84.5
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 6.8e-134 481.1 329 71.4
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.5e-133 479.9 263 84.4
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.6e-133 479.2 275 82.2
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 3.4e-133 478.8 265 84.9
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 4.4e-133 478.4 329 71.1
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 4.4e-133 478.4 329 71.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 4.4e-133 478.4 263 84.8
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 5.8e-133 478.0 266 83.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.9e-133 477.2 275 82.2
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 9.9e-133 477.2 276 80.1
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.3e-132 476.9 266 84.2
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.3e-132 476.9 274 81.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.7e-132 476.5 322 71.4
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.2e-132 476.1 258 85.3
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.9e-132 475.7 329 70.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.9e-132 475.7 263 84.0
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 3.8e-132 475.3 268 82.1
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 3.8e-132 475.3 284 79.6
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.9e-132 474.9 265 83.8
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.9e-132 474.9 329 73.9
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 4.9e-132 474.9 257 85.6
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 8.4e-132 474.2 263 82.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.1e-131 473.8 322 71.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.4e-131 473.4 320 70.6
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.9e-131 473.0 295 75.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.9e-131 473.0 326 70.2
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.2e-131 472.2 263 83.3
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 3.2e-131 472.2 261 84.7
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 4.2e-131 471.9 330 70.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 7.1e-131 471.1 332 69.9
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 7.1e-131 471.1 263 83.7
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 7.1e-131 471.1 263 83.7
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.2e-130 470.3 265 82.3
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.2e-130 470.3 327 70.3
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.6e-130 469.9 330 70.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.6e-130 469.9 266 83.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.5e-130 468.8 264 83.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.6e-130 468.4 330 70.9
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 7.8e-130 467.6 330 76.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.7e-129 466.5 274 79.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 6.6e-129 464.5 242 89.7
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.1e-128 463.8 277 78.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.9e-128 463.0 266 82.0
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 5.6e-128 461.5 258 84.1
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 3.1e-126 455.7 265 80.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.0e-126 455.3 264 79.5
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 5.3e-126 454.9 242 88.0
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.8e-124 448.7 267 79.8
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.8e-124 448.7 329 67.8
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.8e-124 448.7 275 77.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 4.9e-124 448.4 233 89.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 8.1e-119 431.0 287 69.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.1e-118 430.6 247 85.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 3.1e-118 429.1 279 72.8
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.6e-117 426.0 261 77.0
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.7e-116 423.3 221 87.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 7.1e-115 417.9 216 88.4
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 7.1e-115 417.9 270 73.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.7e-114 416.0 213 90.1
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 7.9e-114 414.5 268 73.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.0e-113 414.1 221 86.0
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 3.9e-113 412.1 216 86.6
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 6.9e-110 401.4 228 82.0
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 9.0e-110 401.0 208 88.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.9e-108 396.0 280 67.5
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.0e-106 388.3 267 68.9
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.9e-104 383.3 267 70.8
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.4e-99 367.1 218 77.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.1e-98 363.2 241 72.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.1e-96 357.5 265 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.3e-92 344.0 279 60.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-80 304.3 162 87.0
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.3e-79 300.8 233 60.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.8e-79 298.9 151 91.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-76 290.8 244 61.5
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-75 287.3 218 67.9
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.2e-71 273.5 149 83.9
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 7.0e-70 268.5 178 71.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-67 260.8 208 64.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.1e-66 256.9 142 83.1
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.0e-65 252.7 145 80.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.7e-55 219.5 128 78.9
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 9.5e-51 204.9 145 67.6
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 8.0e-42 175.3 136 64.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.7e-20 104.4 83 63.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.4e-15 85.9 49 77.6
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.2e-14 83.6 48 77.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 5.4e-14 82.8 46 82.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 6.0e-13 79.3 115 43.5


User provided reference genes

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