Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.2e-98 361.3 175 100.0
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 8.5e-83 310.5 172 82.6
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.2e-82 308.5 172 82.6
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.2e-82 307.4 174 81.6
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.2e-82 307.4 174 81.6
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.1e-81 305.8 172 83.1
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 2.1e-81 305.8 172 83.1
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.6e-81 304.7 172 82.6
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 2.3e-80 302.4 172 81.4
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 3.9e-80 301.6 170 81.2
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 3.9e-80 301.6 174 81.0
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 6.7e-80 300.8 172 83.1
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 6.7e-80 300.8 172 81.4
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 8.8e-80 300.4 169 81.7
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.5e-79 299.7 169 81.1
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 2.0e-79 299.3 170 80.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 2.5e-79 298.9 168 81.0
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 3.3e-79 298.5 166 82.5
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 4.3e-79 298.1 172 79.7
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 5.7e-79 297.7 170 78.8
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 7.4e-79 297.4 169 79.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 7.4e-79 297.4 170 80.0
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 9.7e-79 297.0 167 79.0
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 9.7e-79 297.0 170 80.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 78.2
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 78.2
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 78.2
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 2.2e-78 295.8 175 78.9
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.2e-78 295.8 169 79.3
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 2.2e-78 295.8 167 79.0
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 3.7e-78 295.0 172 79.1
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.8e-78 294.7 172 77.9
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 6.3e-78 294.3 168 79.2
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 8.2e-78 293.9 166 80.7
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 1.8e-77 292.7 172 79.1
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 5.3e-77 291.2 174 76.4
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 5.3e-77 291.2 170 78.2
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 5.3e-77 291.2 174 75.9
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 5.3e-77 291.2 166 80.7
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 9.1e-77 290.4 171 76.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 9.1e-77 290.4 170 77.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.2e-76 290.0 167 79.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.2e-76 290.0 167 79.6
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.2e-76 290.0 168 78.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.5e-76 289.7 168 78.6
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.0e-76 289.3 166 78.9
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.6e-76 288.9 172 77.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.6e-76 288.9 174 75.9
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 2.6e-76 288.9 166 79.5
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.6e-76 288.9 166 79.5
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 2.6e-76 288.9 172 77.3
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.6e-76 288.9 172 75.6
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 3.4e-76 288.5 167 79.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 3.4e-76 288.5 166 79.5
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.4e-76 288.5 172 76.2
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 3.4e-76 288.5 176 76.7
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 3.4e-76 288.5 170 77.1
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 4.5e-76 288.1 173 76.9
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.5e-76 288.1 168 78.0
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.9e-76 287.7 168 78.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.9e-76 287.7 166 79.5
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 7.7e-76 287.3 166 79.5
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 7.7e-76 287.3 166 79.5
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.0e-75 287.0 168 76.8
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.0e-75 287.0 172 76.2
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-75 286.6 172 77.9
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.3e-75 286.6 175 76.6
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.7e-75 286.2 168 78.0
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 2.9e-75 285.4 167 78.4
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 2.9e-75 285.4 171 76.6
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.9e-75 285.4 172 75.6
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 2.9e-75 285.4 174 77.0
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 3.8e-75 285.0 167 77.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 5.0e-75 284.6 172 76.2
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 5.0e-75 284.6 172 76.2
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.0e-75 284.6 176 76.7
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.5e-75 284.3 166 78.9
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.1e-74 283.5 169 75.7
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.1e-74 283.5 186 73.1
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-74 283.5 166 77.7
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-74 283.5 166 77.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.4e-74 283.1 166 77.1
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.4e-74 283.1 170 74.7
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.4e-74 283.1 163 79.1
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.2e-74 282.0 172 75.6
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.2e-74 282.0 162 80.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.2e-74 281.6 172 76.2
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.2e-74 281.6 169 75.1
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 4.2e-74 281.6 171 75.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.5e-74 281.2 157 81.5
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 9.4e-74 280.4 172 75.6
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.2e-73 280.0 166 75.9
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.2e-73 280.0 172 75.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.6e-73 279.6 166 73.5
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.6e-73 279.6 174 77.6
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 166 76.5
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 6.1e-73 277.7 166 77.1
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.0e-72 276.9 163 81.0
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.4e-72 276.6 172 76.2
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.4e-72 276.6 174 71.8
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.0e-72 275.4 205 65.9
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.9e-72 275.0 166 75.3
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.9e-72 275.0 169 74.0
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.9e-72 275.0 168 73.2
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 5.1e-72 274.6 166 74.1
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 6.7e-72 274.2 172 74.4
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 8.8e-72 273.9 164 78.7
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 8.8e-72 273.9 166 74.1
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.1e-71 273.5 164 78.7
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.1e-71 273.5 164 78.7
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.4e-71 271.6 164 78.0
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 7.4e-71 270.8 171 71.3
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 7.4e-71 270.8 171 71.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.2e-70 269.2 157 82.8
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 2.8e-70 268.9 172 71.5
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.1e-69 265.0 233 58.4
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.9e-68 261.2 172 68.0
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.3e-67 260.0 154 77.9
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 5.0e-67 258.1 165 70.9
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-66 256.9 166 69.9
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.5e-66 256.5 174 66.1
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.9e-66 256.1 168 70.2
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.2e-65 253.4 155 76.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.6e-65 251.9 172 68.0
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.4e-64 250.0 172 65.7
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.1e-63 246.9 164 67.7
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.1e-63 246.9 171 70.2
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 5.9e-60 234.6 178 62.9
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.3e-59 233.4 172 64.0
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.3e-59 233.4 167 64.1
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.7e-59 233.0 164 65.2
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.1e-58 230.3 168 66.1
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 4.2e-58 228.4 173 61.3
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.4e-56 223.4 166 60.2
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.3e-51 206.8 174 53.4
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 9.4e-50 200.7 110 81.8
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 3.0e-48 195.7 122 73.8
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 7.5e-47 191.0 178 50.6
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.3e-46 190.3 111 79.3
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.5e-42 176.0 106 76.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 2.1e-41 172.9 174 52.3
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.1e-41 171.4 109 68.8
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-39 166.8 109 69.7
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 9.8e-39 164.1 99 74.7
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 9.8e-39 164.1 174 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.7e-38 163.3 104 73.1
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.8e-37 159.8 99 71.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 4.6e-36 155.2 99 70.7
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.3e-35 152.9 85 83.5
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-34 149.8 106 65.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-34 149.8 106 65.1
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 3.6e-33 145.6 173 49.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.2e-28 130.6 171 38.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-27 127.5 76 71.1
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 7.3e-26 121.3 140 50.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 2.6e-23 112.8 121 51.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.5e-18 97.1 63 65.1
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 2.5e-18 96.3 181 30.4
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 4.3e-18 95.5 67 65.7
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.6e-15 86.3 64 59.4
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.7e-14 83.6 66 57.6
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 2.9e-14 82.8 79 49.4
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.4e-13 78.6 69 59.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 5.1e-11 72.0 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.4e-06 55.1 60 53.3


User provided reference genes

Program Settings