Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0955 Cannabis sativa HOM05D006479 ORTHO05D008310 0.0e+00 1097.0 562 100.0
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 3.1e-219 765.4 580 66.2
CiPaw.14G092100 Carya illinoinensis HOM05D006479 ORTHO05D008310 3.8e-217 758.4 580 66.0
COL.COLO4_25288 Corchorus olitorius HOM05D006479 ORTHO05D008310 1.4e-216 756.5 564 66.8
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 3.3e-213 745.3 564 65.2
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 9.6e-213 743.8 564 65.4
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 3.1e-211 738.8 564 64.9
CSS0011125 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 7.6e-210 734.2 578 64.7
CSS0016000 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 7.6e-210 734.2 578 64.7
Thecc.09G263400 Theobroma cacao HOM05D006479 ORTHO05D008310 1.0e-209 733.8 564 68.3
TWI31G0851 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 1.1e-208 730.3 562 64.2
Cpa.g.sc103.78 Carica papaya HOM05D006479 ORTHO05D008310 4.2e-208 728.4 564 65.4
Duzib168G1317 Durio zibethinus HOM05D006479 ORTHO05D008310 1.2e-207 726.9 561 64.3
Duzib150G0338 Durio zibethinus HOM05D006479 ORTHO05D008310 2.1e-207 726.1 565 63.9
Prupe.6G152700 Prunus persica HOM05D006479 ORTHO05D008310 5.1e-206 721.5 579 64.2
THA.LOC104810966 Tarenaya hassleriana HOM05D006479 ORTHO05D008310 3.3e-205 718.8 568 63.7
VMungo0647G2395 Vigna mungo HOM05D006479 ORTHO05D008310 1.6e-204 716.5 580 64.1
Potri.009G157900 Populus trichocarpa HOM05D006479 ORTHO05D008310 2.8e-204 715.7 564 63.7
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 4.8e-204 714.9 581 62.7
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 1.1e-203 713.8 564 65.2
RcHm_v2.0_Chr5g0049781 Rosa chinensis HOM05D006479 ORTHO05D008310 4.1e-203 711.8 577 63.8
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 5.3e-203 711.4 575 61.9
MD11G1180000 Malus domestica HOM05D006479 ORTHO05D008310 1.2e-202 710.3 578 62.8
arahy.Tifrunner.gnm1.ann1.Y6PBB0 Arachis hypogaea HOM05D006479 ORTHO05D008310 2.2e-201 706.1 583 63.1
Glyma.14G044300 Glycine max HOM05D006479 ORTHO05D008310 5.0e-201 704.9 583 64.2
ClCG02G024250 Citrullus lanatus HOM05D006479 ORTHO05D008310 1.4e-200 703.4 567 66.0
CsaV3_4G017380 Cucumis sativus L. HOM05D006479 ORTHO05D008310 1.4e-200 703.4 569 65.7
Glyma.02G273700 Glycine max HOM05D006479 ORTHO05D008310 4.2e-200 701.8 583 64.3
arahy.Tifrunner.gnm1.ann1.K8UYYD Arachis hypogaea HOM05D006479 ORTHO05D008310 9.3e-200 700.7 583 63.0
Hma1.2p1_0218F.1_g092540 Hydrangea macrophylla HOM05D006479 ORTHO05D008310 2.3e-198 696.0 577 64.1
LjContig00564g0006585 Lotus japonicus HOM05D006479 ORTHO05D008310 2.3e-198 696.0 590 62.9
TWI79G0137 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 3.0e-198 695.7 563 62.7
MELO3C014710.2 Cucumis melo HOM05D006479 ORTHO05D008310 6.7e-198 694.5 569 65.0
PGR119G2537 Punica granatum HOM05D006479 ORTHO05D008310 6.7e-198 694.5 576 62.3
Ca_06149_v3 Cicer arietinum L. HOM05D006479 ORTHO05D008310 8.7e-198 694.1 554 65.0
Lalb_Chr10g0105871 Lupinus albus HOM05D006479 ORTHO05D008310 8.7e-198 694.1 533 66.4
Sabra09G0123500 Salix brachista HOM05D006479 ORTHO05D008310 1.5e-197 693.3 564 62.8
Actinidia07016 Actinidia chinensis HOM05D006479 ORTHO05D008310 7.4e-197 691.0 567 62.1
Thhalv10016076m.g Eutrema salsugineum HOM05D006479 ORTHO05D008310 2.2e-196 689.5 567 60.1
FAN16G0753 Fragaria x ananassa HOM05D006479 ORTHO05D008310 4.8e-196 688.3 529 66.4
FAN25G2741 Fragaria x ananassa HOM05D006479 ORTHO05D008310 6.3e-196 688.0 571 63.4
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 1.2e-194 683.7 569 61.9
FAN21G3675 Fragaria x ananassa HOM05D006479 ORTHO05D008310 2.6e-194 682.6 529 66.0
Medtr5g087680 Medicago truncatula HOM05D006479 ORTHO05D008310 2.6e-194 682.6 587 62.0
Ciclev10014249m.g Citrus clementina HOM05D006479 ORTHO05D008310 7.7e-194 681.0 560 62.1
Rhsim13G0200600 Rhododendron simsii HOM05D006479 ORTHO05D008310 5.0e-193 678.3 584 60.1
Sp6g23500 Schrenkiella parvula HOM05D006479 ORTHO05D008310 6.5e-193 677.9 567 58.9
Eucgr.J00620 Eucalyptus grandis HOM05D006479 ORTHO05D008310 8.5e-193 677.6 547 62.3
FvH4_3g27150 Fragaria vesca HOM05D006479 ORTHO05D008310 2.5e-192 676.0 571 62.3
FAN11G0648 Fragaria x ananassa HOM05D006479 ORTHO05D008310 2.5e-192 676.0 571 62.2
Psat2g023000 Pisum sativum HOM05D006479 ORTHO05D008310 2.5e-192 676.0 561 62.4
Solyc11g072050.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 3.2e-192 675.6 569 61.0
Cc01_g07460 Coffea canephora HOM05D006479 ORTHO05D008310 5.5e-192 674.9 569 61.2
PGSC0003DMG400027398 Solanum tuberosum HOM05D006479 ORTHO05D008310 7.2e-192 674.5 569 61.3
AT5G21040 Arabidopsis thaliana HOM05D006479 ORTHO05D008310 1.6e-191 673.3 567 59.4
TPR.G11782 Trifolium pratense HOM05D006479 ORTHO05D008310 4.6e-191 671.8 532 65.4
Oeu025955.1 Olea europaea HOM05D006479 ORTHO05D008310 6.1e-191 671.4 561 59.9
Sopen11g029700 Solanum pennellii HOM05D006479 ORTHO05D008310 6.1e-191 671.4 569 60.6
BolC9t58367H Brassica oleracea HOM05D006479 ORTHO05D008310 1.1e-189 667.2 563 59.5
AL6G32590 Arabidopsis lyrata HOM05D006479 ORTHO05D008310 2.5e-189 666.0 558 59.5
Lj2C905T5 Lonicera japonica HOM05D006479 ORTHO05D008310 4.3e-189 665.2 563 61.5
C09p55040 Brassica napus HOM05D006479 ORTHO05D008310 7.4e-189 664.5 563 59.3
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 2.8e-188 662.5 580 59.1
BraA10t43981Z Brassica rapa HOM05D006479 ORTHO05D008310 6.3e-188 661.4 562 59.1
DCAR_002128 Daucus carota HOM05D006479 ORTHO05D008310 6.3e-188 661.4 572 59.1
A10p19030 Brassica napus HOM05D006479 ORTHO05D008310 8.2e-188 661.0 563 59.3
Carub.0006s1934 Capsella rubella HOM05D006479 ORTHO05D008310 1.1e-187 660.6 551 58.8
Atru.chr3.2921 Acer truncatum HOM05D006479 ORTHO05D008310 2.6e-186 656.0 562 59.8
CARHR191830 Cardamine hirsuta HOM05D006479 ORTHO05D008310 3.4e-186 655.6 566 57.8
Nitab4.5_0006265g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 4.5e-186 655.2 527 62.6
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 1.3e-185 653.7 568 59.0
HanXRQChr16g0509731 Helianthus annuus HOM05D006479 ORTHO05D008310 5.0e-185 651.7 535 62.6
MSTRG.17656 Avicennia marina HOM05D006479 ORTHO05D008310 1.4e-184 650.2 564 58.0
Aa31LG1G13720 Aethionema arabicum HOM05D006479 ORTHO05D008310 4.7e-183 645.2 573 56.2
ECA236G3846 Erigeron canadensis HOM05D006479 ORTHO05D008310 8.8e-182 641.0 563 58.8
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 1.7e-180 636.7 488 62.5
Oeu032070.1 Olea europaea HOM05D006479 ORTHO05D008310 1.7e-180 636.7 553 57.9
AUR62001606 Chenopodium quinoa HOM05D006479 ORTHO05D008310 2.8e-180 636.0 487 62.4
Solyc06g073650.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 1.1e-179 634.0 564 57.8
PGSC0003DMG400005946 Solanum tuberosum HOM05D006479 ORTHO05D008310 1.4e-179 633.6 564 57.6
Sopen06g030060 Solanum pennellii HOM05D006479 ORTHO05D008310 1.8e-179 633.3 564 57.6
Migut.N02413 Erythranthe guttata HOM05D006479 ORTHO05D008310 2.4e-179 632.9 567 58.2
Aqoxy1G00109 Aquilegia oxysepala HOM05D006479 ORTHO05D008310 1.1e-176 624.0 531 62.3
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 3.1e-171 605.9 578 54.7
Lsat_1_v5_gn_8_104041 Lactuca sativa HOM05D006479 ORTHO05D008310 5.3e-171 605.1 550 57.3
Migut.D00711 Erythranthe guttata HOM05D006479 ORTHO05D008310 2.2e-164 583.2 551 56.6
SHI25344 Sapria himalayana HOM05D006479 ORTHO05D008310 4.1e-163 578.9 564 55.3
PSO339G5772 Papaver somniferum HOM05D006479 ORTHO05D008310 2.2e-161 573.2 485 59.8
PSO384G3454 Papaver somniferum HOM05D006479 ORTHO05D008310 2.9e-161 572.8 500 58.0
Os04g0619700 Oryza sativa ssp. japonica HOM05D006479 ORTHO05D008310 1.0e-158 564.3 492 55.9
BcaC04g19499 Brassica carinata HOM05D006479 ORTHO05D008310 2.3e-158 563.1 562 53.7
Phvul.008G208228 Phaseolus vulgaris HOM05D006479 ORTHO05D008310 2.0e-157 560.1 405 71.6
Zm00001eb431140 Zea mays HOM05D006479 ORTHO05D008310 9.1e-155 551.2 497 55.5
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 7.7e-154 548.1 491 55.4
CDE08G0797 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 3.8e-153 545.8 482 55.4
GSVIVG01037436001 Vitis vinifera HOM05D006479 ORTHO05D008310 1.2e-146 524.2 404 66.6
Nn3g20864 Nelumbo nucifera HOM05D006479 ORTHO05D008310 7.8e-146 521.5 381 69.0
MBI13_g00570_MAGBIO Magnolia biondii HOM05D006479 ORTHO05D008310 1.2e-143 514.2 445 56.2
ATR0068G008 Amborella trichopoda HOM05D006479 ORTHO05D008310 1.0e-142 511.1 494 52.4
SEGI_01115 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 4.0e-142 509.2 573 48.7
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 5.2e-142 508.8 541 49.7
Cfa010250 Carpinus fangiana HOM05D006479 ORTHO05D008310 7.5e-141 505.0 477 55.3
TAR636G1386 Trochodendron aralioides HOM05D006479 ORTHO05D008310 1.3e-137 494.2 349 67.9
FAN21G1997 Fragaria x ananassa HOM05D006479 ORTHO05D008310 2.3e-129 466.8 357 67.2
Haze_23643 Corylus avellana HOM05D006479 ORTHO05D008310 3.8e-116 422.9 445 50.8
SEGI_34026 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 1.3e-108 397.9 491 45.0
Mapoly0060s0027 Marchantia polymorpha HOM05D006479 ORTHO05D008310 1.9e-104 384.0 467 43.3
Pp3c4_8230 Physcomitrium patens HOM05D006479 ORTHO05D008310 1.3e-103 381.3 529 39.9
SMO358G0705 Selaginella moellendorffii HOM05D006479 ORTHO05D008310 1.0e-89 335.1 456 41.0
SGA_v2.0_scaffold16G07575 Striga asiatica HOM05D006479 ORTHO05D008310 3.0e-73 280.4 434 39.9
Nitab4.5_0008289g0040 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.6e-61 240.7 343 40.2
Nitab4.5_0000205g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 6.1e-58 229.6 346 37.3
Sed0023099 Sechium edule HOM05D006479 ORTHO05D010107 9.1e-54 215.7 341 37.8
Peaxi162Scf00978g00216 Petunia axillaris HOM05D006479 ORTHO05D008310 3.6e-50 203.8 343 36.2
CAN.G65.211 Capsicum annuum HOM05D006479 ORTHO05D008310 1.7e-28 131.7 136 50.0
MSTRG.12413 Avicennia marina HOM05D006479 ORTHO05D008310 2.5e-27 127.9 104 67.3
Nitab4.5_0000271g0260 Nicotiana tabacum HOM05D006479 ORTHO05D008310 4.7e-26 123.6 76 63.2
Nitab4.5_0000271g0270 Nicotiana tabacum HOM05D006479 ORTHO05D008310 3.3e-19 100.9 100 54.0
Cre07.g355750 Chlamydomonas reinhardtii HOM05D006479 ORTHO05D008310 1.6e-18 98.6 491 23.4
SGA_v2.0_scaffold92G28170 Striga asiatica HOM05D006479 ORTHO05D008310 1.1e-11 75.9 100 40.0
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 4.3e-11 73.9 162 35.2
Phvul.003G207000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 2.1e-10 71.6 162 34.6
VMungo1215G1002 Vigna mungo HOM05D000453 ORTHO05D000387 1.1e-09 69.3 162 35.2
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.3e-09 68.2 172 32.0
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 5.2e-09 67.0 172 31.4
Rhsim07G0022000 Rhododendron simsii HOM05D001335 ORTHO05D001184 5.2e-09 67.0 163 29.4
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 6.8e-09 66.6 264 25.4
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 6.8e-09 66.6 160 28.1
Rhsim07G0021900 Rhododendron simsii HOM05D001335 ORTHO05D001184 8.9e-09 66.2 163 29.4
Ca_28149_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 5.8e-08 63.5 236 25.8
Ca_30673_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 5.8e-08 63.5 236 25.8
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 7.6e-08 63.2 171 31.0
Eucgr.K02772 Eucalyptus grandis HOM05D000453 ORTHO05D000387 9.9e-08 62.8 151 30.5
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 2.2e-07 61.6 171 30.4
Glyma.02G225400 Glycine max HOM05D001335 ORTHO05D001184 2.2e-07 61.6 175 29.7
Glyma.15G174500 Glycine max HOM05D001335 ORTHO05D001184 2.2e-07 61.6 175 29.7
Glyma.15G174800 Glycine max HOM05D001335 ORTHO05D001184 2.2e-07 61.6 175 29.7
Glyma.15G175000 Glycine max HOM05D001335 ORTHO05D001184 2.2e-07 61.6 175 29.7
Glyma.15G175100 Glycine max HOM05D001335 ORTHO05D001184 2.2e-07 61.6 175 29.7
Glyma.17G126000 Glycine max HOM05D000453 ORTHO05D000387 2.2e-07 61.6 161 32.3
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 3.8e-07 60.8 171 30.4
arahy.Tifrunner.gnm1.ann1.W4V2BL Arachis hypogaea HOM05D001335 ORTHO05D001184 3.8e-07 60.8 168 31.0
Glyma.05G043500 Glycine max HOM05D000453 ORTHO05D000387 3.8e-07 60.8 162 32.7
Glyma.15G174300 Glycine max HOM05D001335 ORTHO05D001184 3.8e-07 60.8 175 29.1
Glyma.15G174833 Glycine max HOM05D001335 ORTHO05D001184 3.8e-07 60.8 175 29.1
Glyma.15G174866 Glycine max HOM05D001335 ORTHO05D001184 3.8e-07 60.8 175 30.3
Glyma.15G174932 Glycine max HOM05D001335 ORTHO05D001184 3.8e-07 60.8 175 29.1
Glyma.15G175300 Glycine max HOM05D001335 ORTHO05D001184 3.8e-07 60.8 175 29.7
arahy.Tifrunner.gnm1.ann1.WU4XQ7 Arachis hypogaea HOM05D001335 ORTHO05D001184 4.9e-07 60.5 168 30.4
arahy.Tifrunner.gnm1.ann1.85MML8 Arachis hypogaea HOM05D001335 ORTHO05D001184 6.4e-07 60.1 171 30.4
Glyma.15G174700 Glycine max HOM05D001335 ORTHO05D001184 6.4e-07 60.1 175 29.7
Glyma.15G174965 Glycine max HOM05D001335 ORTHO05D001184 6.4e-07 60.1 175 29.1
Glyma.15G175400 Glycine max HOM05D001335 ORTHO05D001184 6.4e-07 60.1 175 29.1
Glyma.U005100 Glycine max HOM05D001335 ORTHO05D001184 6.4e-07 60.1 175 29.1
Atru.chr10.1113 Acer truncatum HOM05D001335 ORTHO05D001184 8.4e-07 59.7 169 28.4
Glyma.15G174400 Glycine max HOM05D001335 ORTHO05D001184 8.4e-07 59.7 175 29.1
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.1e-06 59.3 171 29.8
arahy.Tifrunner.gnm1.ann1.LEPX0K Arachis hypogaea HOM05D001335 ORTHO05D001184 1.1e-06 59.3 168 30.4
Glyma.15G174900 Glycine max HOM05D001335 ORTHO05D001184 1.1e-06 59.3 175 29.1
AUR62024219 Chenopodium quinoa HOM05D000453 ORTHO05D000387 1.4e-06 58.9 126 33.3
Glyma.15G175500 Glycine max HOM05D001335 ORTHO05D001184 1.4e-06 58.9 175 29.1
Gorai.002G188800 Gossypium raimondii HOM05D000453 ORTHO05D000387 1.4e-06 58.9 124 33.9
Thecc.01G155400 Theobroma cacao HOM05D001335 ORTHO05D001184 2.4e-06 58.2 165 27.9
PRCOL_00000917 Prasinoderma coloniale HOM05D004669 ORTHO05D005767 3.2e-06 57.8 129 30.2
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 3.2e-06 57.8 145 28.3
vmacro13342 Vaccinium macrocarpon HOM05D001335 ORTHO05D001184 3.2e-06 57.8 142 29.6
vmacro13344 Vaccinium macrocarpon HOM05D001335 ORTHO05D001184 3.2e-06 57.8 111 32.4
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 4.1e-06 57.4 169 28.4
arahy.Tifrunner.gnm1.ann1.A57DXV Arachis hypogaea HOM05D001335 ORTHO05D001184 4.1e-06 57.4 169 29.0
Glyma.14G192200 Glycine max HOM05D001335 ORTHO05D001184 4.1e-06 57.4 175 28.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.1e-06 57.4 165 27.3
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 4.1e-06 57.4 160 28.8
VMungo0464G0868 Vigna mungo HOM05D001335 ORTHO05D001184 4.1e-06 57.4 120 29.2
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 5.4e-06 57.0 261 26.1
Thecc.01G139900 Theobroma cacao HOM05D001335 ORTHO05D001184 5.4e-06 57.0 165 27.9
GSVIVG01030721001 Vitis vinifera HOM05D006479 ORTHO05D008310 5.4e-06 57.0 82 43.9
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.1e-06 56.6 123 35.0
MD07G1027800 Malus domestica HOM05D000453 ORTHO05D000387 7.1e-06 56.6 131 29.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.1e-06 56.6 75 34.7
CAN.G428.4 Capsicum annuum HOM05D001335 ORTHO05D001184 9.2e-06 56.2 161 27.3
COL.COLO4_23512 Corchorus olitorius HOM05D000453 ORTHO05D000387 9.2e-06 56.2 123 31.7
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 9.2e-06 56.2 159 28.3
Solyc03g026350.3 Solanum lycopersicum HOM05D001335 ORTHO05D001184 9.2e-06 56.2 161 27.3


User provided reference genes

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