Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.6e-231 805.1 422 100.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 3.1e-147 525.8 286 85.7
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 3.4e-146 522.3 283 85.2
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 3.4e-146 522.3 283 85.2
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.3e-145 520.4 464 65.7
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.8e-145 518.8 427 67.9
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 8.4e-145 517.7 283 85.2
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.2e-144 515.4 282 84.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 5.5e-144 515.0 459 62.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 9.3e-144 514.2 283 84.1
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 9.3e-144 514.2 283 84.1
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 7.9e-143 511.1 283 83.4
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.3e-142 510.4 422 68.0
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.6e-141 505.0 283 83.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 7.4e-141 504.6 283 82.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 7.4e-141 504.6 283 82.7
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.1e-140 503.1 286 80.4
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 8.2e-140 501.1 442 63.1
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.1e-139 500.7 283 82.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.4e-139 500.4 283 82.3
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.0e-137 494.2 306 77.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.0e-137 494.2 304 75.7
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.3e-137 493.8 438 62.8
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.9e-137 492.7 401 65.1
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 3.8e-137 492.3 283 80.9
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 4.9e-137 491.9 422 63.3
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.5e-136 489.6 416 66.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.5e-136 488.4 455 56.7
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 9.3e-136 487.6 409 67.7
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.2e-135 487.3 284 78.9
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 6.0e-135 485.0 261 84.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 6.0e-135 485.0 276 80.1
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 6.0e-135 485.0 424 65.1
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.0e-134 484.2 394 66.8
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.3e-134 483.8 336 72.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 8.7e-134 481.1 436 64.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.5e-133 480.3 299 74.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.9e-133 479.9 261 83.5
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.9e-133 479.9 279 78.9
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.9e-133 479.9 262 84.0
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 4.3e-133 478.8 283 79.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.3e-133 478.8 259 83.0
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.7e-133 478.4 447 57.3
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 9.7e-133 477.6 283 78.8
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.8e-132 476.1 442 60.9
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.7e-132 475.7 284 77.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.7e-132 475.7 455 62.0
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 8.2e-132 474.6 348 72.1
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 8.2e-132 474.6 423 63.8
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.4e-131 473.0 259 83.8
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.3e-131 471.9 276 79.3
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 5.3e-131 471.9 418 62.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.3e-131 471.9 283 77.4
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 9.0e-131 471.1 344 70.9
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.5e-130 470.3 273 79.1
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.0e-130 469.9 259 81.9
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 5.9e-130 468.4 259 82.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.7e-129 466.8 264 81.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 2.2e-129 466.5 292 75.3
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 2.9e-129 466.1 371 65.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.9e-129 466.1 267 79.0
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 3.8e-129 465.7 267 80.1
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 5.0e-129 465.3 278 78.4
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 8.5e-129 464.5 259 80.3
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.4e-128 463.8 267 79.8
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.9e-128 463.4 269 78.8
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.2e-128 462.6 253 81.0
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.5e-128 461.8 442 54.5
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 5.5e-128 461.8 267 80.5
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 7.2e-128 461.5 342 70.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 9.3e-128 461.1 264 81.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.6e-127 460.3 285 75.8
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.6e-127 460.3 284 76.1
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.6e-127 460.3 256 81.2
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 7.9e-127 458.0 284 75.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.4e-126 457.2 422 58.1
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-126 457.2 433 55.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 2.3e-126 456.4 289 73.0
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.3e-126 456.4 401 59.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 3.9e-126 455.7 286 75.5
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 3.9e-126 455.7 311 73.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.7e-126 454.9 290 74.1
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 8.8e-126 454.5 268 77.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.3e-125 452.2 398 63.1
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.3e-125 452.2 284 73.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 9.7e-125 451.1 283 72.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 9.7e-125 451.1 279 75.3
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.8e-124 449.5 365 64.4
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.8e-124 449.5 280 73.6
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 8.2e-124 448.0 469 54.4
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.4e-123 446.4 287 72.1
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 4.1e-123 445.7 256 80.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 4.5e-122 442.2 238 84.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-121 440.7 290 72.4
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.8e-121 439.1 267 78.3
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.9e-120 436.8 260 77.7
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 5.5e-120 435.3 261 77.0
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 5.5e-120 435.3 262 76.7
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.5e-120 435.3 251 77.3
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 7.2e-120 434.9 291 71.5
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.7e-119 432.2 344 62.8
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.3e-118 429.9 283 73.1
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.7e-118 428.3 298 68.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.5e-117 427.2 322 65.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 5.7e-117 425.2 277 71.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.1e-115 421.0 321 65.1
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.4e-115 419.9 238 81.5
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.5e-112 408.7 303 65.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 5.5e-112 408.7 350 63.4
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 5.2e-110 402.1 342 60.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 6.7e-110 401.7 438 51.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.3e-108 397.5 339 58.4
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 4.1e-107 392.5 396 54.3
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.4e-104 381.3 260 70.8
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 3.5e-98 362.8 215 75.8
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 4.5e-98 362.5 203 79.3
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.8e-92 343.2 303 56.1
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-91 340.5 303 55.8
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.6e-90 337.4 183 84.7
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.7e-89 334.0 306 52.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.5e-88 330.1 277 59.2
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.0e-86 324.7 263 66.9
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 2.0e-85 320.5 175 85.7
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.2e-84 317.0 349 57.0
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.2e-84 317.0 349 57.0
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.8e-84 316.6 171 84.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.2e-82 311.2 355 56.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.5e-82 309.3 276 57.6
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.9e-82 308.9 205 73.7
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.7e-81 307.4 245 61.2
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.0e-78 298.1 192 74.0
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.0e-74 283.9 270 55.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.1e-72 278.1 271 54.6
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 5.6e-72 275.8 301 51.8
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.1e-66 257.3 287 47.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.9e-64 250.8 224 55.4
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 4.3e-64 249.6 232 53.9
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 9.5e-64 248.4 242 49.6
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 9.2e-59 231.9 191 58.6
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-58 231.1 151 74.2
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.5e-58 229.9 195 63.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.0e-57 228.4 203 57.6
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.1e-56 224.9 253 52.6
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.0e-53 214.2 162 61.1
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 5.8e-53 212.6 230 51.3
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.7e-52 211.1 223 49.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.8e-47 193.7 249 44.2
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 7.1e-43 179.1 159 55.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.4e-38 164.9 127 58.3
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.2e-37 161.8 106 66.0
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.0e-33 148.7 91 72.5
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.9e-28 129.8 80 70.0
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 3.9e-17 93.6 49 79.6
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 3.9e-17 93.6 49 79.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.1e-14 85.5 52 71.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 9.7e-08 62.4 165 27.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 3.7e-07 60.5 141 29.1


User provided reference genes

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