Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.8e-185 652.5 345 100.0
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 6.8e-68 261.9 432 43.8
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 3.2e-65 253.1 416 43.3
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 1.6e-64 250.8 430 42.3
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.7e-64 250.0 412 41.5
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.7e-64 250.0 426 40.4
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 1.3e-63 247.7 432 41.4
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.5e-62 244.2 433 40.2
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 1.6e-61 240.7 431 39.4
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 6.2e-61 238.8 429 41.7
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 2.3e-60 236.9 421 40.1
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.5e-59 234.2 427 39.8
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.7e-58 230.7 430 38.8
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.7e-58 230.7 428 39.5
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 1.7e-58 230.7 436 39.2
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 1.7e-58 230.7 308 46.1
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 4.1e-57 226.1 387 40.3
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 5.4e-57 225.7 313 44.7
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.6e-56 224.2 434 38.9
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 3.5e-56 223.0 327 44.3
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 6.0e-56 222.2 427 36.8
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 1.0e-55 221.5 329 45.0
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 1.7e-55 220.7 442 37.3
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 2.3e-55 220.3 312 42.0
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 2.3e-55 220.3 329 44.7
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 3.9e-55 219.5 306 43.8
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 1.5e-54 217.6 347 42.7
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.9e-54 217.2 419 38.2
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 3.3e-54 216.5 433 37.0
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 5.6e-54 215.7 338 41.7
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 5.6e-54 215.7 340 43.2
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 9.5e-54 214.9 386 39.4
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 9.5e-54 214.9 439 36.7
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 1.2e-53 214.5 424 35.8
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 1.6e-53 214.2 321 45.2
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 1.6e-53 214.2 435 37.7
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 6.2e-53 212.2 441 37.2
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.1e-52 211.5 325 42.5
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.1e-52 211.5 325 42.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 1.4e-52 211.1 407 38.8
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 1.4e-52 211.1 340 42.9
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 1.4e-52 211.1 319 42.9
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.8e-52 210.7 424 35.4
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 5.2e-52 209.1 344 41.6
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 6.8e-52 208.8 293 45.1
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 1.2e-51 208.0 342 41.2
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 1.5e-51 207.6 416 37.7
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 1.5e-51 207.6 213 57.7
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 2.6e-51 206.8 424 36.1
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 3.4e-51 206.5 428 36.0
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 4.4e-51 206.1 429 35.4
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 7.6e-51 205.3 439 35.3
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 7.6e-51 205.3 402 35.8
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 9.9e-51 204.9 410 36.3
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 9.9e-51 204.9 322 42.9
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 2.2e-50 203.8 439 34.9
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 3.8e-50 203.0 381 38.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 4.9e-50 202.6 429 36.4
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 6.4e-50 202.2 394 37.8
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.1e-49 201.4 465 34.2
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.9e-49 200.7 441 34.7
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 2.4e-49 200.3 438 35.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 2.4e-49 200.3 331 39.9
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 5.4e-49 199.1 364 39.6
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 1.6e-48 197.6 414 36.2
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 4.6e-48 196.1 426 36.4
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 4.6e-48 196.1 426 36.4
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 6.0e-48 195.7 366 39.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.3e-47 194.5 434 35.9
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 1.7e-47 194.1 343 39.9
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.3e-47 193.7 394 37.3
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 3.9e-47 193.0 439 34.4
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 5.1e-47 192.6 426 36.2
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 5.1e-47 192.6 442 35.5
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 6.6e-47 192.2 300 41.3
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 6.6e-47 192.2 267 44.9
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 1.1e-46 191.4 343 39.7
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.9e-46 190.7 432 34.7
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 2.5e-46 190.3 406 35.2
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 2.5e-46 190.3 350 39.1
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 5.6e-46 189.1 465 33.3
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 7.3e-46 188.7 438 34.9
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 9.6e-46 188.3 399 34.6
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 9.6e-46 188.3 292 42.8
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.2e-45 188.0 438 33.8
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 1.2e-45 188.0 308 42.5
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 6.2e-45 185.7 317 40.1
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.4e-44 184.5 431 35.7
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.4e-44 184.5 431 35.7
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 3.1e-44 183.3 362 38.1
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 2.0e-43 180.6 361 36.6
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.7e-42 177.6 361 36.3
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 2.2e-42 177.2 407 35.6
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 8.4e-42 175.3 389 36.5
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.4e-41 174.5 291 39.2
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 1.9e-41 174.1 327 37.0
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 1.2e-40 171.4 319 37.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 6.6e-39 165.6 394 34.8
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 7.3e-38 162.2 178 56.2
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.3e-37 161.4 399 35.3
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 9.0e-36 155.2 358 33.5
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 3.2e-33 146.7 312 36.2
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 4.2e-33 146.4 187 48.7
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 7.1e-33 145.6 236 40.7
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 1.6e-32 144.4 182 50.0
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 5.1e-31 139.4 220 41.8
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 1.1e-30 138.3 172 51.2
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 1.5e-27 127.9 180 42.2
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 2.4e-25 120.6 179 40.8
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 7.1e-25 119.0 281 35.9
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.5e-24 116.7 181 43.1
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.8e-23 114.4 199 38.7
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 5.1e-23 112.8 126 50.8
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 6.5e-18 95.9 176 36.9
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.1e-17 95.1 169 40.2
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 7.1e-17 92.4 163 35.6
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 1.6e-16 91.3 97 49.5
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 7.9e-16 89.0 177 33.9
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 7.9e-16 89.0 177 33.9
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.3e-14 83.6 180 31.7
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.7e-13 80.1 180 29.4
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.8e-12 77.8 158 37.3
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 1.8e-12 77.8 144 37.5
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 3.2e-09 67.0 240 28.3
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.7e-08 63.9 169 29.6
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 1.4e-07 61.6 190 31.1
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 2.3e-07 60.8 190 30.5
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 2.3e-07 60.8 184 27.2
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 2.3e-07 60.8 184 27.2
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 3.9e-07 60.1 188 28.7
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 3.9e-07 60.1 184 29.3
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 3.9e-07 60.1 184 28.8
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 5.1e-07 59.7 188 29.8
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 6.7e-07 59.3 190 30.5
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 8.8e-07 58.9 192 28.1
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 8.8e-07 58.9 187 31.0
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 8.8e-07 58.9 187 31.0
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 8.8e-07 58.9 187 31.0
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 8.8e-07 58.9 190 30.5
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 1.1e-06 58.5 190 30.0
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.1e-06 58.5 42 61.9
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 1.1e-06 58.5 182 28.0
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 1.1e-06 58.5 191 31.4
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 1.1e-06 58.5 191 31.4
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 1.1e-06 58.5 190 30.0
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 1.1e-06 58.5 190 30.0
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.5e-06 58.2 187 29.9
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 1.5e-06 58.2 192 27.6
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.5e-06 58.2 190 28.4
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 1.9e-06 57.8 192 26.0
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 1.9e-06 57.8 187 28.3
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 1.9e-06 57.8 187 28.3
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 2.5e-06 57.4 184 29.9
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 3.3e-06 57.0 190 29.5
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 3.3e-06 57.0 183 29.5
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 4.3e-06 56.6 195 28.2
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 4.3e-06 56.6 187 29.9
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 4.3e-06 56.6 187 29.9
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 4.3e-06 56.6 206 29.6
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 4.3e-06 56.6 185 29.7
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 4.3e-06 56.6 192 27.6
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 4.3e-06 56.6 183 29.5
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 5.7e-06 56.2 195 28.2
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 7.4e-06 55.8 188 30.3
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 7.4e-06 55.8 192 26.0
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 7.4e-06 55.8 183 30.6
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 9.7e-06 55.5 192 25.5
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 9.7e-06 55.5 189 28.0


User provided reference genes

Program Settings