Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 7.4e-290 1000.0 562 100.0
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 2.9e-132 476.5 606 55.1
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 1.7e-124 450.7 605 52.9
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 5.4e-123 445.7 526 59.5
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 2.1e-122 443.7 608 52.3
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 1.0e-121 441.4 608 53.5
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 1.1e-107 394.8 610 47.9
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 6.6e-105 385.6 609 46.8
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 3.6e-103 379.8 606 46.2
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.4e-102 377.1 569 50.3
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 5.3e-102 375.9 569 50.3
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 2.6e-101 373.6 605 49.1
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 4.5e-101 372.9 571 50.3
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 9.9e-101 371.7 602 47.5
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 9.3e-99 365.2 579 49.6
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 6.0e-98 362.5 598 49.0
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 6.0e-98 362.5 600 47.5
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 7.9e-98 362.1 598 49.0
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 2.3e-97 360.5 617 45.4
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 5.6e-96 355.9 599 46.2
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 1.3e-95 354.8 608 46.5
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 2.1e-95 354.0 566 50.2
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 4.8e-95 352.8 602 49.5
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 3.1e-94 350.1 601 47.3
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 2.6e-93 347.1 614 41.4
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 2.9e-92 343.6 653 41.2
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 4.2e-91 339.7 612 46.2
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 1.2e-90 338.2 612 43.6
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 2.3e-89 334.0 575 47.7
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 1.5e-88 331.3 674 38.7
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 7.4e-88 328.9 610 41.8
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 2.1e-87 327.4 683 37.5
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 3.2e-83 313.5 600 42.8
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 3.6e-82 310.1 618 41.6
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 1.8e-81 307.8 618 40.0
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 2.3e-81 307.4 607 43.3
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 1.1e-80 305.1 614 41.4
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 1.5e-80 304.7 606 39.4
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 1.9e-80 304.3 607 43.3
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 2.5e-80 303.9 618 38.2
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 4.3e-80 303.1 631 39.8
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 5.7e-80 302.8 621 39.3
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 2.2e-79 300.8 605 40.7
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 3.7e-79 300.1 297 59.9
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 4.8e-79 299.7 607 39.7
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 5.3e-78 296.2 623 39.2
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 7.7e-77 292.4 628 37.3
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 1.0e-76 292.0 586 46.2
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 3.8e-76 290.0 648 37.5
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 5.0e-76 289.7 607 39.7
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 8.5e-76 288.9 609 41.9
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 1.1e-75 288.5 609 39.4
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 1.4e-75 288.1 608 41.1
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 2.1e-74 284.3 580 45.2
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 4.5e-69 266.5 613 42.1
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 1.8e-65 254.6 622 41.2
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 1.5e-64 251.5 609 36.5
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 2.0e-64 251.1 667 33.6
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 3.3e-64 250.4 636 36.0
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 1.3e-63 248.4 592 38.9
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 1.8e-62 244.6 639 36.0
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 2.0e-61 241.1 656 34.9
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 2.6e-61 240.7 591 39.4
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 4.5e-61 240.0 579 36.6
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 4.5e-61 240.0 640 35.8
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 1.0e-60 238.8 587 41.1
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 1.7e-60 238.0 343 48.7
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 8.5e-60 235.7 686 35.4
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 7.2e-59 232.6 588 38.8
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 2.7e-58 230.7 293 51.2
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 3.3e-56 223.8 434 37.6
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.3e-52 211.8 379 39.6
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 3.8e-52 210.3 372 41.4
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 3.0e-49 200.7 656 33.2
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 2.0e-48 198.0 645 32.9
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 2.2e-47 194.5 634 32.5
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 2.4e-46 191.0 375 40.0
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 1.2e-45 188.7 634 34.4
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 1.7e-44 184.9 631 32.0
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 5.0e-44 183.3 384 37.0
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 8.5e-44 182.6 583 32.8
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 4.2e-43 180.3 614 32.7
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 9.5e-43 179.1 488 34.8
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 6.1e-42 176.4 614 32.6
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 6.1e-42 176.4 614 32.6
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 1.8e-41 174.9 711 28.3
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 6.8e-41 172.9 645 32.7
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 2.0e-40 171.4 599 31.9
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 2.0e-40 171.4 595 32.1
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 1.1e-38 165.6 645 33.5
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 3.5e-37 160.6 570 29.5
CANSAT54G0676 Cannabis sativa HOM05D005763 ORTHO05D005970 1.3e-36 158.7 75 97.3
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 2.3e-36 157.9 623 30.3
Lj9A299T32 Lonicera japonica HOM05D005763 ORTHO05D005970 1.5e-35 155.2 287 40.1
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 2.5e-35 154.5 647 32.6
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 4.7e-34 150.2 641 28.1
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.0e-33 149.1 227 42.7
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 6.8e-33 146.4 337 35.9
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 1.5e-32 145.2 172 46.5
Ca_00042_v3 Cicer arietinum L. HOM05D005763 ORTHO05D005970 2.2e-31 141.4 599 30.6
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 1.2e-29 135.6 78 75.6
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 2.7e-29 134.4 220 39.1
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 3.5e-29 134.0 280 37.9
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 5.9e-29 133.3 214 40.7
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 5.9e-29 133.3 198 39.9
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 2.3e-28 131.3 185 43.8
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 5.0e-28 130.2 77 76.6
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.9e-27 128.3 73 76.7
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 3.3e-27 127.5 76 73.7
Lj9C299T2 Lonicera japonica HOM05D005763 ORTHO05D005970 5.6e-27 126.7 77 76.6
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 9.5e-27 125.9 167 47.3
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.6e-26 125.2 184 44.6
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.6e-26 125.2 167 47.3
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 4.7e-26 123.6 76 72.4
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 1.0e-25 122.5 104 56.7
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 4.0e-25 120.6 228 36.8
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 6.8e-25 119.8 280 35.7
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.9e-25 119.4 162 43.8
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 8.9e-25 119.4 162 43.8
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 8.9e-25 119.4 87 67.8
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.5e-24 118.6 147 44.9
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 2.0e-24 118.2 174 42.0
SMO367G0653 Selaginella moellendorffii HOM05D005763 ORTHO05D005970 2.6e-24 117.9 136 45.6
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.6e-24 117.9 289 38.1
MD15G1434900 Malus domestica HOM05D005763 ORTHO05D005970 3.4e-24 117.5 74 67.6
GSVIVG01023253001 Vitis vinifera HOM05D005763 ORTHO05D005970 4.4e-24 117.1 82 64.6
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 5.8e-24 116.7 104 54.8
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 5.8e-24 116.7 74 74.3
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 1.3e-23 115.5 192 38.5
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 1.3e-23 115.5 92 62.0
COL.COLO4_29043 Corchorus olitorius HOM05D005763 ORTHO05D005970 1.7e-23 115.2 178 44.4
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 3.7e-23 114.0 77 66.2
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 4.9e-23 113.6 252 34.5
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 6.4e-23 113.2 77 67.5
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 6.4e-23 113.2 202 38.1
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.9e-22 111.7 128 46.9
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 4.1e-22 110.5 176 38.6
Actinidia39001 Actinidia chinensis HOM05D005763 ORTHO05D005970 2.0e-21 108.2 264 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3967 Anthoceros agrestis HOM05D005763 ORTHO05D005970 2.1e-18 98.2 72 58.3
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 1.2e-16 92.4 531 27.7
Sabra01G0169400 Salix brachista HOM05D005763 ORTHO05D005970 1.7e-15 88.6 132 40.2
AUR62040622 Chenopodium quinoa HOM05D005763 ORTHO05D005970 3.7e-15 87.4 277 30.3
Mapoly0005s0143 Marchantia polymorpha HOM05D005763 ORTHO05D005970 6.4e-15 86.7 89 43.8
CBR_g8387 Chara braunii HOM05D005763 ORTHO05D005970 1.7e-12 78.6 88 45.5
arahy.Tifrunner.gnm1.ann1.BFGT2Z Arachis hypogaea HOM05D005763 ORTHO05D005970 2.3e-12 78.2 141 48.2
SalBow7G1738 Salvia bowleyana HOM05D005763 ORTHO05D005970 3.0e-12 77.8 604 25.2
DCAR_001755 Daucus carota HOM05D005763 ORTHO05D005970 1.1e-11 75.9 296 32.1
MBI06_g48164_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 4.0e-09 67.4 199 34.2
Phvul.003G274300 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 3.8e-07 60.8 162 27.8
SEGI_38605 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 1.1e-06 59.3 67 40.3
Glyma.08G264100 Glycine max HOM05D000336 ORTHO05D002705 2.4e-06 58.2 162 28.4
MD13G1214300 Malus domestica HOM05D000336 ORTHO05D002705 2.4e-06 58.2 71 35.2
VMungo0251G1086 Vigna mungo HOM05D000336 ORTHO05D002705 3.2e-06 57.8 162 29.0
Prupe.4G121200 Prunus persica HOM05D000336 ORTHO05D002705 4.1e-06 57.4 71 36.6
arahy.Tifrunner.gnm1.ann1.D9KKI5 Arachis hypogaea HOM05D000336 ORTHO05D002705 5.4e-06 57.0 71 38.0
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.1e-06 56.6 71 35.2
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.1e-06 56.6 71 35.2
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 7.1e-06 56.6 71 35.2
MD10G1224000 Malus domestica HOM05D000336 ORTHO05D002705 7.1e-06 56.6 71 33.8
CiPaw.02G175600 Carya illinoinensis HOM05D000336 ORTHO05D002705 9.2e-06 56.2 167 28.1
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 9.2e-06 56.2 71 35.2
SHI09137 Sapria himalayana HOM05D000336 ORTHO05D002705 9.2e-06 56.2 71 36.6
vmacro15461 Vaccinium macrocarpon HOM05D000336 ORTHO05D002705 9.2e-06 56.2 72 37.5
Zm00001eb246410 Zea mays HOM05D000336 ORTHO05D002301 9.2e-06 56.2 95 32.6


User provided reference genes

Program Settings