Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.1e-199 699.9 376 100.0
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 4.1e-135 485.3 376 70.5
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 7.3e-124 448.0 366 71.0
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.1e-123 444.5 383 67.9
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 4.4e-121 438.7 378 66.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.6e-121 438.0 376 68.1
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 7.6e-121 438.0 382 68.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.3e-120 437.2 370 69.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 8.4e-120 434.5 384 67.2
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.4e-119 431.8 372 66.9
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.7e-118 429.5 385 66.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.8e-118 427.9 385 66.0
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-117 427.6 403 64.0
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.0e-117 427.6 403 64.0
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 8.6e-117 424.5 383 65.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.6e-117 424.5 383 65.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.5e-116 423.7 364 66.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-116 422.9 403 63.3
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.2e-114 415.2 366 66.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 8.9e-114 414.5 367 65.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 7.6e-113 411.4 383 64.0
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 8.4e-112 407.9 440 57.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.2e-110 404.1 378 64.6
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-110 403.3 366 65.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.7e-110 402.9 391 62.4
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.5e-110 402.5 408 61.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.3e-109 400.6 368 63.0
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.1e-108 397.5 370 64.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.0e-106 389.0 364 65.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.3e-106 388.7 365 64.4
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.5e-105 387.1 377 63.7
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 4.4e-105 385.6 404 60.9
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.4e-104 381.3 337 66.5
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.9e-103 380.2 389 62.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.4e-103 378.6 388 60.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.3e-101 374.0 411 58.2
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.1e-100 370.9 366 62.0
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.3e-100 369.0 385 59.2
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 7.3e-100 368.2 387 58.1
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 8.1e-99 364.8 410 57.6
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.1e-98 364.4 380 62.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.1e-98 364.4 380 62.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.0e-98 362.5 402 56.2
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.3e-98 362.1 304 66.4
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.6e-97 358.2 373 58.7
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.3e-96 357.5 435 54.5
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.7e-96 357.1 410 56.8
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.9e-96 355.5 367 59.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.1e-95 354.4 382 59.9
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.4e-95 354.0 350 61.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-95 353.6 386 60.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.5e-95 352.1 393 56.7
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.5e-95 352.1 406 55.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.7e-94 349.7 409 55.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.0e-93 347.8 379 58.8
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.3e-93 347.4 406 54.2
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.3e-93 346.7 400 54.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 8.7e-93 344.7 380 58.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.5e-92 343.2 370 57.8
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 4.3e-92 342.4 444 52.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 9.6e-92 341.3 380 57.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-91 340.9 384 55.2
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.4e-90 337.4 381 55.9
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.2e-88 330.1 446 49.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.1e-87 327.8 424 50.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 7.1e-87 325.1 473 49.5
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.3e-87 324.7 426 52.3
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.7e-86 323.2 462 48.9
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 7.9e-86 321.6 476 46.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 5.1e-85 318.9 472 48.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 8.7e-85 318.2 469 47.8
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.5e-84 316.6 380 53.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.5e-84 316.6 386 52.6
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.3e-83 314.3 403 51.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.6e-83 313.9 428 51.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.1e-83 313.5 470 48.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 2.8e-83 313.2 468 47.6
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.1e-82 311.2 499 46.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 4.1e-82 309.3 466 47.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.1e-82 309.3 466 47.4
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.6e-81 306.6 366 55.5
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.6e-81 306.6 444 48.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 3.4e-81 306.2 312 58.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 5.9e-81 305.4 361 54.6
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 7.6e-81 305.1 468 47.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 7.6e-81 305.1 312 58.7
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.0e-80 304.7 390 51.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.2e-80 303.5 363 52.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 6.5e-80 302.0 475 45.1
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.2e-79 299.7 379 54.1
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 7.2e-79 298.5 388 51.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 9.3e-79 298.1 362 52.2
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.6e-78 297.4 401 49.9
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.5e-78 296.2 475 45.3
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 7.9e-78 295.0 352 55.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.8e-77 293.9 333 55.9
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.3e-77 293.5 392 50.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 3.9e-77 292.7 481 45.3
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.9e-77 292.7 381 52.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.5e-76 290.8 495 45.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.6e-75 287.3 492 44.3
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.2e-75 287.0 434 48.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.1e-74 282.7 339 52.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.1e-74 282.7 400 51.0
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.2e-73 281.2 389 51.7
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.2e-72 276.9 400 49.8
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.2e-72 276.9 349 53.0
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 5.0e-72 275.8 345 53.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.4e-71 274.2 482 42.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 2.7e-70 270.0 363 52.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 3.9e-69 266.2 350 51.4
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.8e-67 260.0 421 45.8
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 2.5e-63 246.9 420 42.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.5e-63 245.7 360 51.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 4.7e-62 242.7 440 43.6
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.9e-62 241.9 284 54.6
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.0e-61 241.5 345 49.0
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.8e-61 240.7 291 54.6
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.8e-59 233.4 441 40.4
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 9.4e-55 218.4 268 55.2
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 4.0e-53 213.0 329 48.0
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.5e-49 199.9 359 42.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 6.5e-48 195.7 382 42.1
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.9e-47 194.1 324 48.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.2e-47 193.4 371 43.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 9.8e-44 181.8 386 41.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.7e-43 181.0 129 74.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 5.9e-41 172.6 344 40.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.9e-31 141.0 353 37.4
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.3e-31 140.2 157 56.1
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 6.6e-24 115.9 76 78.9
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 6.6e-24 115.9 75 78.7
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 7.3e-23 112.5 260 37.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.0e-22 109.0 138 45.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-20 105.1 71 70.4
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 4.4e-20 103.2 67 73.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 7.5e-20 102.4 67 73.1
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.3e-19 101.7 83 69.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.9e-19 99.8 65 69.2
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-18 98.6 59 79.7
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.7e-17 94.0 122 48.4
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.3e-16 90.9 354 33.1
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.0e-16 89.7 58 72.4
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.2e-13 79.7 208 36.1
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.2e-11 74.3 207 35.7
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.4e-10 69.7 88 50.0
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 7.1e-10 69.3 88 50.0
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.2e-09 68.6 88 48.9
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.6e-09 68.2 88 48.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 2.1e-09 67.8 86 52.3
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-08 65.5 114 42.1
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-08 65.5 114 42.1
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-08 65.5 114 42.1
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.3e-07 60.1 114 40.4


User provided reference genes

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