Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1780.0 897 100.0
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1257.3 891 67.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1244.6 891 66.6
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1240.3 892 67.2
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1236.1 891 65.3
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1231.9 891 67.3
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1223.8 893 66.4
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1223.4 893 66.5
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1223.4 893 66.6
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1223.4 879 64.8
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1223.0 879 66.2
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1209.9 874 68.1
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1207.6 914 64.9
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1201.8 886 64.4
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1189.9 891 63.7
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1188.7 915 62.4
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1182.9 878 64.4
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1181.4 890 63.0
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1179.5 879 64.3
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1165.2 874 63.5
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1154.8 945 59.0
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1150.6 878 62.6
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1143.3 877 62.6
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1142.9 879 62.3
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1139.0 877 62.5
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1133.6 874 61.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1131.3 892 60.9
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1130.9 755 70.2
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1111.3 881 59.8
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1105.5 885 60.5
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 881 60.7
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1103.2 759 67.5
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1100.9 888 60.4
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1095.9 751 66.8
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1079.7 881 59.6
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 7.4e-311 1070.5 879 59.2
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 9.2e-311 1070.1 890 58.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 8.8e-309 1063.5 890 57.8
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 8.8e-309 1063.5 852 59.7
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.7e-307 1059.3 901 58.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 1.1e-306 1056.6 875 56.6
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 2.4e-306 1055.4 752 65.4
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 6.9e-306 1053.9 888 58.3
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 2.6e-305 1052.0 888 56.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 4.5e-305 1051.2 895 57.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 1.7e-304 1049.3 870 59.2
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 1.6e-302 1042.7 901 56.8
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 7.9e-302 1040.4 749 64.0
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 7.9e-302 1040.4 899 55.6
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 3.0e-301 1038.5 867 58.4
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 5.7e-300 1034.2 758 62.1
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 1.3e-299 1033.1 868 56.1
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 2.0e-297 1025.8 910 56.3
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.7e-294 1015.4 884 55.5
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 1.8e-293 1012.7 851 57.8
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 2.3e-293 1012.3 897 54.8
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.1e-292 1010.0 825 58.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.6e-292 1008.8 853 56.9
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 7.4e-292 1007.3 865 55.7
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.7e-291 1005.0 896 54.7
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 2.0e-289 999.2 884 54.3
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 1.2e-286 989.9 850 55.6
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.2e-286 989.9 895 54.1
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.1e-286 989.2 872 54.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 1.8e-285 986.1 648 70.1
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 2.4e-282 975.7 835 55.7
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.4e-282 975.7 828 55.7
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.7e-281 972.2 898 53.0
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 3.5e-281 971.8 820 56.2
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 4.0e-277 958.4 829 54.6
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.5e-276 956.4 725 60.7
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.5e-276 956.4 725 60.7
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 2.4e-274 949.1 843 53.3
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 1.5e-271 939.9 817 54.7
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 3.7e-267 925.2 859 53.7
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 5.4e-266 921.4 834 52.4
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 8.9e-261 904.0 727 60.2
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.5e-260 903.3 825 54.4
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 7.5e-260 901.0 631 67.4
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.7e-259 899.8 710 59.4
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.7e-256 889.8 894 51.7
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.1e-255 887.1 858 50.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 6.2e-254 881.3 865 52.8
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.8e-253 877.9 671 61.8
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 8.6e-248 860.9 858 48.6
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 2.8e-246 855.9 619 63.3
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 6.6e-232 808.1 752 54.7
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.4e-226 788.5 550 66.5
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 7.1e-210 734.9 475 70.1
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.6e-206 723.8 888 46.1
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.8e-189 667.2 745 44.4
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 7.2e-186 655.2 508 58.1
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.5e-183 647.5 581 53.7
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.1e-173 614.8 578 54.3
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.1e-157 559.7 531 50.7
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.0e-155 555.1 477 57.9
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 2.3e-152 543.9 439 58.3
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.6e-148 531.2 368 66.6
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.6e-137 494.6 413 61.0
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 4.4e-127 459.9 782 33.4
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 9.6e-122 442.2 379 58.0
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.3e-82 310.8 307 54.1
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 8.2e-81 306.2 234 59.4
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.3e-73 282.3 261 54.4
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.0e-67 262.7 160 72.5
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.7e-67 260.0 291 47.4
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.1e-66 259.2 293 44.7
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 6.3e-57 226.9 294 43.5
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.8e-49 201.4 283 41.3
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 6.1e-36 157.1 157 51.6
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-34 152.9 157 49.7
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 3.7e-33 147.9 132 52.3
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.2e-31 142.9 90 67.8
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.0e-30 139.8 105 64.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 5.0e-22 110.9 80 62.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 3.6e-20 104.8 424 24.5
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 8.1e-20 103.6 94 54.3
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.5e-18 99.4 86 55.8
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.0e-14 85.1 50 72.0
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 7.3e-13 80.5 61 57.4
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.1e-11 75.1 58 51.7
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.2e-10 73.2 52 65.4
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 4.4e-10 71.2 41 75.6
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 2.3e-06 58.9 91 40.7


User provided reference genes

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