Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 5.3e-131 471.1 246 100.0
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.7e-97 359.8 243 73.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 9.4e-96 354.0 249 77.1
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.3e-93 345.5 243 72.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.2e-92 342.8 245 71.4
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.8e-92 342.4 247 73.7
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.8e-91 339.7 244 72.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 3.1e-91 339.0 246 70.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.6e-90 335.9 248 75.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 3.5e-90 335.5 244 72.5
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.5e-89 330.9 247 74.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-88 329.3 234 75.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 5.5e-88 328.2 247 73.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 3.6e-87 325.5 248 71.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 6.7e-86 321.2 220 74.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 8.8e-86 320.9 234 74.4
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.8e-86 320.9 244 73.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.7e-84 316.6 255 67.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.7e-84 316.6 234 73.5
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-84 316.2 245 66.5
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.8e-84 315.8 264 64.0
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 6.3e-84 314.7 234 73.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 3.1e-83 312.4 250 65.2
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 7.0e-83 311.2 237 67.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 7.0e-83 311.2 248 63.7
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-81 307.0 241 68.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.7e-81 306.6 244 66.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.2e-81 306.2 253 66.8
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.9e-81 305.8 238 67.6
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.8e-81 305.4 248 67.3
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 6.5e-81 304.7 248 66.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.9e-80 303.1 233 70.4
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.6e-79 300.1 253 60.9
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.6e-79 298.9 250 66.4
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.7e-79 298.5 267 62.5
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 6.1e-79 298.1 200 75.0
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.8e-78 296.6 237 62.9
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.0e-78 295.4 252 64.7
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.2e-78 295.0 219 73.5
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.5e-77 293.5 258 60.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.5e-77 293.5 232 72.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 4.4e-77 292.0 250 62.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 5.7e-77 291.6 204 76.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 8.3e-76 287.7 251 62.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.1e-75 285.8 249 63.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 9.1e-75 284.3 251 64.1
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.6e-74 283.5 251 63.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.0e-74 283.1 254 64.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 4.5e-74 282.0 254 63.8
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.5e-74 282.0 239 67.8
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 7.7e-74 281.2 247 63.2
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-73 279.6 251 63.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 5.0e-73 278.5 271 56.8
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.9e-72 276.6 221 70.6
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 9.4e-72 274.2 268 59.0
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-71 273.9 267 58.1
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-71 273.9 250 58.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.6e-71 273.5 250 58.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 2.1e-71 273.1 250 58.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 2.7e-71 272.7 206 69.9
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.6e-71 272.3 250 58.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.7e-71 271.9 244 67.6
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 6.1e-71 271.6 302 57.0
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.0e-70 270.8 265 61.9
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.3e-70 269.6 241 58.1
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.0e-70 268.9 239 59.8
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 8.8e-70 267.7 248 66.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.5e-69 266.9 176 79.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.0e-69 266.5 206 68.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.6e-69 266.2 210 65.7
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.7e-69 265.0 245 59.2
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-68 263.8 200 67.5
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.7e-68 263.5 239 60.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.9e-68 261.9 238 63.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 4.9e-68 261.9 244 64.3
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 6.3e-68 261.5 253 57.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 8.3e-68 261.2 264 57.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.1e-67 260.8 258 57.0
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.8e-67 260.0 203 65.0
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.4e-67 259.6 259 59.8
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.1e-67 259.2 186 71.5
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.4e-67 258.5 244 61.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 5.4e-67 258.5 177 74.0
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 9.2e-67 257.7 245 61.6
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.5e-66 255.4 286 56.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 4.5e-66 255.4 254 60.2
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.7e-65 253.4 251 58.6
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 8.6e-65 251.1 262 52.7
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 8.6e-65 251.1 250 54.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.9e-64 250.0 259 60.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.9e-64 250.0 250 54.0
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.3e-64 249.2 241 63.1
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.8e-63 246.1 222 63.1
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 6.1e-63 245.0 237 57.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 6.1e-63 245.0 238 59.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.3e-62 243.0 177 76.3
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 6.8e-62 241.5 263 52.1
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-61 240.0 269 52.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.0e-61 240.0 269 52.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.6e-61 239.6 236 56.4
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.6e-61 239.6 236 56.4
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 3.4e-61 239.2 269 52.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 7.5e-61 238.0 269 51.7
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.7e-60 235.7 245 54.3
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 4.9e-60 235.3 229 57.6
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.1e-59 234.2 203 65.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.4e-59 233.8 217 56.7
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 9.2e-59 231.1 178 68.5
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.0e-57 227.6 250 55.6
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.0e-57 226.1 257 57.2
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.9e-57 225.7 251 59.4
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-56 223.8 238 57.1
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.9e-56 223.4 237 59.9
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.9e-56 223.4 261 48.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 8.0e-55 218.0 259 55.2
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.4e-54 217.2 176 59.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.4e-54 217.2 226 54.9
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.3e-54 216.5 223 57.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 3.1e-54 216.1 257 48.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.1e-54 216.1 264 51.1
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 5.2e-54 215.3 240 52.5
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 8.9e-54 214.5 189 60.8
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 5.8e-53 211.8 252 48.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.0e-50 201.8 202 56.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.3e-49 200.7 163 67.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-48 197.6 181 59.7
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.5e-48 197.2 185 64.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.5e-48 196.4 175 56.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.9e-46 188.0 199 52.3
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.5e-45 187.2 203 54.2
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-45 187.2 138 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.9e-44 183.0 191 49.2
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-43 181.0 258 43.0
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.6e-42 177.2 176 55.1
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.9e-40 170.2 116 65.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.9e-40 170.2 189 49.2
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.1e-38 162.9 140 67.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 8.9e-38 161.4 141 62.4
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.8e-37 158.7 134 63.4
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.2e-35 152.9 227 43.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.2e-35 152.9 153 62.7
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 7.8e-34 148.3 148 70.3
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.8e-34 148.3 141 72.3
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.8e-34 148.3 159 59.1
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.7e-33 147.1 110 65.5
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.6e-33 145.2 102 68.6
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.5e-32 144.1 133 63.9
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-32 143.7 155 49.0
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.7e-31 139.0 251 44.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.1e-30 137.9 184 44.6
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-27 127.9 103 58.3
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.6e-26 122.5 150 62.0
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.6e-23 114.0 238 37.4
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 3.1e-22 109.8 171 42.1
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.0e-22 109.4 101 69.3
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.0e-22 108.2 98 65.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.5e-21 107.5 68 69.1
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 5.8e-21 105.5 133 55.6
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.7e-20 104.0 81 55.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 9.3e-19 98.2 113 39.8
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 7.9e-18 95.1 87 72.4
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 6.7e-17 92.0 67 62.7
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.6e-15 87.4 81 53.1
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 6.9e-14 82.0 96 52.1
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.7e-12 77.4 70 58.6
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.4e-11 73.6 48 66.7
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 5.5e-11 72.4 99 40.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.6e-10 70.9 68 50.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-08 64.7 66 54.5
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-08 64.7 50 56.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-07 59.7 51 72.5
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-07 59.7 51 72.5
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 3.1e-06 56.6 34 67.6
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 6.9e-06 55.5 53 39.6
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 6.9e-06 55.5 53 43.4


User provided reference genes

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