Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 9.6e-104 380.2 193 100.0
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 9.4e-51 204.1 187 61.0
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 9.4e-51 204.1 183 61.7
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 2.7e-50 202.6 184 62.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.7e-50 202.6 183 61.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 3.6e-50 202.2 186 60.8
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.1e-50 201.4 183 61.2
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 3.0e-49 199.1 177 62.7
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 4.0e-49 198.7 184 60.3
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 5.2e-49 198.4 186 61.3
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 6.8e-49 198.0 185 61.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 8.8e-49 197.6 194 58.8
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.5e-48 196.8 188 59.0
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.0e-48 196.4 185 60.5
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 4.4e-48 195.3 189 59.8
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.5e-48 194.5 189 59.8
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 9.7e-48 194.1 185 59.5
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.7e-48 194.1 181 61.9
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.3e-47 191.4 184 59.2
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.3e-47 191.4 193 57.5
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.4e-46 190.3 190 59.5
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-46 190.3 197 58.4
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.4e-46 189.5 155 68.4
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 4.1e-46 188.7 191 56.0
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 5.3e-46 188.3 145 68.3
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.2e-45 187.2 187 58.8
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 3.5e-45 185.7 193 58.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 4.5e-45 185.3 145 66.2
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 7.7e-45 184.5 196 56.1
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 7.7e-45 184.5 136 71.3
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.0e-44 184.1 146 69.2
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.7e-44 183.3 146 69.9
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.7e-44 183.3 191 58.1
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.7e-44 183.3 139 70.5
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.7e-44 183.3 148 66.2
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.2e-44 183.0 192 58.3
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.2e-44 183.0 140 72.1
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.2e-44 183.0 190 57.4
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 2.9e-44 182.6 160 62.5
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.8e-44 182.2 196 55.1
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.8e-44 182.2 160 61.2
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 5.0e-44 181.8 142 69.0
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 5.0e-44 181.8 139 70.5
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.0e-44 181.8 190 56.3
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 5.0e-44 181.8 190 55.8
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 6.5e-44 181.4 199 54.8
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.5e-44 181.4 157 65.6
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.5e-44 181.4 157 65.6
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.5e-44 181.4 186 59.7
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 8.5e-44 181.0 132 72.0
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-43 180.6 191 57.1
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.1e-43 180.6 190 56.8
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-43 180.6 183 57.9
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.5e-43 180.3 184 55.4
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.9e-43 179.9 191 57.1
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.9e-43 179.9 190 55.8
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.9e-43 179.9 150 65.3
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.5e-43 179.5 138 70.3
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.5e-43 179.5 139 70.5
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.2e-43 179.1 187 55.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.2e-43 179.1 188 56.9
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 3.2e-43 179.1 199 55.3
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.2e-43 179.1 145 65.5
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 7.2e-43 177.9 146 66.4
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 7.2e-43 177.9 155 65.2
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 7.2e-43 177.9 140 67.1
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.2e-42 177.2 183 56.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.6e-42 176.8 139 69.8
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.7e-42 175.3 187 53.5
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 6.1e-42 174.9 189 53.4
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 8.0e-42 174.5 183 55.7
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 8.0e-42 174.5 187 53.5
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.0e-41 174.1 190 53.7
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.4e-41 173.7 139 69.1
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.4e-41 173.7 188 54.8
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.8e-41 173.3 135 68.9
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.8e-41 173.3 187 53.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.3e-41 172.9 192 53.6
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.3e-41 172.9 138 67.4
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 3.0e-41 172.6 145 64.1
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 3.0e-41 172.6 145 64.1
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.0e-41 172.6 192 53.1
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.0e-41 172.6 138 65.9
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.0e-41 172.6 138 65.9
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 4.0e-41 172.2 145 64.1
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 4.0e-41 172.2 142 66.2
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.0e-41 172.2 145 64.1
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 4.0e-41 172.2 191 55.5
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 5.2e-41 171.8 145 64.1
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 8.8e-41 171.0 182 56.6
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.2e-40 170.6 147 62.6
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.5e-40 170.2 187 51.9
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 2.0e-40 169.9 133 68.4
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.0e-40 169.9 185 54.1
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.6e-40 169.5 139 67.6
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.6e-40 169.5 139 66.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.6e-40 169.5 144 61.8
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.6e-40 169.5 147 62.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 4.4e-40 168.7 202 52.0
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 5.7e-40 168.3 191 51.8
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 7.5e-40 167.9 135 68.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 9.8e-40 167.5 146 63.7
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 1.7e-39 166.8 134 67.2
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.7e-39 166.8 133 66.9
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.2e-39 166.4 134 66.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 3.7e-39 165.6 152 58.6
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.7e-39 165.6 133 66.9
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 6.3e-39 164.9 185 54.6
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 8.3e-39 164.5 133 67.7
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-38 164.1 105 78.1
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.1e-38 164.1 145 63.4
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-38 163.7 145 63.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.4e-38 163.7 134 67.2
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.4e-38 163.7 183 53.0
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.8e-38 163.3 135 67.4
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.8e-38 163.3 144 63.2
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.8e-38 163.3 105 78.1
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.8e-38 163.3 105 78.1
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.1e-38 162.5 133 66.2
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.1e-38 162.2 148 60.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.4e-38 161.8 148 62.8
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 5.4e-38 161.8 133 64.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 7.0e-38 161.4 143 64.3
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 9.1e-38 161.0 104 77.9
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 9.1e-38 161.0 150 60.0
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 9.1e-38 161.0 144 63.9
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.2e-37 160.6 133 66.2
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 4.5e-37 158.7 132 64.4
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 7.7e-37 157.9 191 48.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.7e-36 156.8 153 61.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 3.8e-36 155.6 104 75.0
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.6e-36 154.8 105 74.3
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 6.6e-36 154.8 180 50.6
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 1.5e-35 153.7 132 62.9
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.5e-35 151.8 136 58.1
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 7.2e-35 151.4 166 56.0
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 9.5e-35 151.0 105 71.4
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.2e-34 150.6 171 52.6
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.8e-34 149.4 133 57.9
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 6.1e-34 148.3 142 56.3
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 6.1e-34 148.3 166 54.2
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 3.0e-33 146.0 105 70.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 8.9e-33 144.4 193 49.2
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.2e-32 144.1 105 69.5
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.5e-32 143.7 136 55.9
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 5.7e-32 141.7 105 69.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 5.7e-32 141.7 190 47.9
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.6e-28 128.3 192 43.2
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.6e-28 128.3 192 43.2
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 2.5e-27 126.3 154 51.9
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 2.5e-27 126.3 109 62.4
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.3e-27 125.9 124 57.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 8.9e-25 117.9 153 50.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.3e-23 114.0 103 56.3
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.4e-22 110.5 140 49.3
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.6e-21 107.1 88 64.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.3e-20 104.0 104 61.5
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.1e-19 100.9 86 66.3
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-19 100.1 86 66.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 7.3e-19 98.2 82 65.9
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-18 97.4 86 65.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-18 97.4 86 65.1
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.2e-18 97.4 106 50.0
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 4.7e-18 95.5 105 53.3
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 9.8e-16 87.8 91 57.1
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 8.1e-10 68.2 58 62.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.0e-09 65.9 86 43.0
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 8.9e-09 64.7 44 72.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 4.4e-08 62.4 44 72.7
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 2.2e-07 60.1 40 72.5


User provided reference genes

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