Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.5e-212 742.7 395 100.0
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 2.6e-172 609.0 395 76.2
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 9.9e-172 607.1 393 76.3
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 4.9e-171 604.7 395 75.7
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 4.1e-170 601.7 395 75.4
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 4.1e-170 601.7 395 80.0
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 3.5e-169 598.6 395 74.4
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 6.2e-166 587.8 395 78.2
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 3.1e-165 585.5 395 72.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 4.0e-165 585.1 395 72.4
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 4.0e-165 585.1 395 72.7
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 5.2e-165 584.7 395 72.2
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 6.9e-165 584.3 393 73.8
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 5.4e-162 574.7 395 72.7
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 9.3e-162 573.9 395 71.1
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.2e-161 573.5 395 71.1
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 1.6e-161 573.2 395 72.4
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 2.7e-161 572.4 470 63.6
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 7.8e-161 570.9 395 73.7
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 1.3e-160 570.1 419 69.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.7e-160 569.7 395 70.6
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.6e-160 567.8 395 70.4
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 6.6e-160 567.8 387 71.1
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.1e-159 567.0 395 74.7
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.1e-159 567.0 395 70.1
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.5e-159 566.6 395 70.6
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.5e-159 565.8 392 75.8
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 3.3e-159 565.5 395 69.9
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.3e-158 563.5 395 70.4
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.6e-158 563.1 393 69.7
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.1e-158 562.8 395 74.7
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 6.2e-158 561.2 392 68.9
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.1e-157 560.5 395 70.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 6.9e-157 557.8 396 69.4
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 9.0e-157 557.4 396 69.9
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 9.0e-157 557.4 385 77.4
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.2e-156 557.0 386 69.9
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 5.8e-156 554.7 363 73.8
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 5.8e-156 554.7 395 68.6
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 5.8e-156 554.7 404 75.0
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 9.9e-156 553.9 383 69.5
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.3e-155 553.5 386 69.4
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.3e-155 553.5 380 69.5
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.1e-154 550.4 395 69.4
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 1.1e-154 550.4 398 67.8
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.1e-154 550.4 396 68.4
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.9e-154 549.7 386 74.1
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 5.4e-154 548.1 395 68.1
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 2.1e-153 546.2 385 68.1
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.3e-152 543.5 369 76.2
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.3e-152 543.5 397 68.0
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.8e-152 543.1 397 67.0
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.1e-152 541.6 384 70.1
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 8.7e-152 540.8 433 68.1
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 2.5e-151 539.3 388 67.8
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 4.3e-151 538.5 399 72.7
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 5.6e-151 538.1 395 67.3
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 5.6e-151 538.1 388 67.5
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 9.6e-151 537.3 385 71.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 3.7e-150 535.4 385 73.5
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 4.0e-149 531.9 386 67.9
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 5.8e-148 528.1 386 66.6
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 9.9e-148 527.3 385 66.5
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 9.9e-148 527.3 385 66.5
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.7e-147 526.6 385 66.8
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 3.8e-147 525.4 385 66.5
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 4.9e-147 525.0 385 70.9
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 6.4e-147 524.6 385 66.2
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.1e-146 523.9 396 71.7
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-143 513.5 382 72.3
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 5.6e-143 511.5 385 65.5
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 5.6e-143 511.5 389 72.2
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 7.4e-143 511.1 382 72.8
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 2.1e-142 509.6 382 72.5
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.2e-142 508.1 384 69.0
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.2e-142 508.1 350 70.9
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 1.4e-141 506.9 388 70.9
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 5.3e-141 505.0 343 77.8
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 2.6e-140 502.7 391 64.7
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 2.6e-140 502.7 388 70.4
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 5.8e-140 501.5 385 63.4
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 4.2e-138 495.4 386 62.2
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 5.1e-136 488.4 374 65.5
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 2.2e-134 483.0 301 78.7
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 8.2e-134 481.1 328 73.2
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 5.0e-131 471.9 385 59.2
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 1.6e-129 466.8 375 62.7
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 2.1e-129 466.5 386 63.7
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 4.6e-129 465.3 382 59.4
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.4e-128 463.8 395 60.5
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-127 460.3 385 61.0
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 6.9e-125 451.4 321 67.9
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.9e-123 446.0 386 59.1
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 4.2e-122 442.2 477 52.2
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 1.6e-121 440.3 395 59.5
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 9.7e-119 431.0 290 79.7
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 2.2e-118 429.9 386 55.7
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 2.4e-117 426.4 369 60.7
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 3.1e-117 426.0 347 68.0
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 7.4e-111 404.8 261 80.8
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 5.3e-109 398.7 281 70.1
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 7.0e-109 398.3 259 72.6
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 2.6e-108 396.4 309 73.5
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.9e-108 395.2 310 72.6
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 2.2e-107 393.3 259 79.2
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.7e-105 386.3 301 63.1
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.2e-103 380.9 308 71.4
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.5e-103 380.6 350 58.0
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 5.0e-91 339.0 333 54.4
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 8.3e-86 321.6 264 71.6
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.2e-84 317.8 321 51.1
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 8.6e-83 311.6 391 45.8
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.1e-72 278.1 211 65.4
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 8.6e-67 258.5 191 66.5
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.1e-66 258.1 260 58.1
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.4e-64 251.1 298 46.3
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 2.5e-58 230.3 333 44.7
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 3.3e-58 229.9 312 46.8
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 8.1e-57 225.3 162 67.9
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 4.6e-52 209.5 207 47.3
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 6.0e-52 209.1 156 66.7
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 5.1e-51 206.1 151 68.2
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 2.5e-50 203.8 152 67.8
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 1.6e-49 201.1 143 69.9
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.8e-48 197.6 123 78.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 6.4e-38 162.5 386 31.6
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.2e-28 131.7 148 51.4
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.6e-28 131.3 81 70.4
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.3e-27 128.3 81 67.9
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 2.3e-27 127.5 284 29.6
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 4.3e-26 123.2 89 71.9
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 1.3e-22 111.7 78 65.4
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 1.3e-22 111.7 78 65.4
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 1.7e-22 111.3 78 65.4
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.5e-22 109.4 59 88.1
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 1.2e-20 105.1 387 26.9
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 2.4e-16 90.9 57 66.7
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 4.6e-12 76.6 133 36.1
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 8.2e-09 65.9 42 66.7
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 8.2e-09 65.9 42 66.7
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 8.2e-09 65.9 42 64.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.4e-08 64.3 41 65.9
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 2.4e-08 64.3 42 64.3
arahy.Tifrunner.gnm1.ann1.L111E7 Arachis hypogaea HOM05D010413 ORTHO05D014444 6.9e-08 62.8 42 64.3
arahy.Tifrunner.gnm1.ann1.MPAX92 Arachis hypogaea HOM05D010413 ORTHO05D014444 6.9e-08 62.8 42 64.3
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 9.1e-08 62.4 41 63.4
arahy.Tifrunner.gnm1.ann1.ME0VC2 Arachis hypogaea HOM05D010413 ORTHO05D085118 1.5e-07 61.6 42 61.9
arahy.Tifrunner.gnm1.ann1.M7HUWS Arachis hypogaea HOM05D002233 ORTHO05D002299 2.0e-07 61.2 42 59.5
arahy.Tifrunner.gnm1.ann1.T67Q9P Arachis hypogaea HOM05D010413 ORTHO05D014444 2.0e-07 61.2 40 62.5
arahy.Tifrunner.gnm1.ann1.6EF6C9 Arachis hypogaea HOM05D010413 ORTHO05D014444 2.6e-07 60.8 41 61.0
arahy.Tifrunner.gnm1.ann1.FWSD6F Arachis hypogaea HOM05D010413 ORTHO05D019779 3.4e-07 60.5 42 61.9
arahy.Tifrunner.gnm1.ann1.UH56EU Arachis hypogaea HOM05D002233 ORTHO05D002299 4.5e-07 60.1 42 59.5
arahy.Tifrunner.gnm1.ann1.1IC9XV Arachis hypogaea HOM05D010413 ORTHO05D002299 2.9e-06 57.4 42 59.5
arahy.Tifrunner.gnm1.ann1.AUS62E Arachis hypogaea HOM05D010413 ORTHO05D014444 2.9e-06 57.4 40 60.0
arahy.Tifrunner.gnm1.ann1.QTEC4T Arachis hypogaea HOM05D010413 ORTHO05D014444 2.9e-06 57.4 42 54.8
arahy.Tifrunner.gnm1.ann1.CL1AA5 Arachis hypogaea HOM05D010413 ORTHO05D014444 3.8e-06 57.0 42 59.5


User provided reference genes

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