Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.1e-180 635.6 320 100.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 7.4e-85 318.2 320 54.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.8e-84 315.5 311 53.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.1e-83 312.8 323 52.6
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 8.8e-78 294.7 291 53.3
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 2.6e-77 293.1 322 51.2
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 9.7e-77 291.2 319 52.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.8e-76 289.7 298 49.7
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.8e-75 287.0 312 51.9
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-74 284.3 303 51.5
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.6e-74 283.1 310 50.6
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.0e-73 281.2 322 48.8
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.9e-72 276.9 311 50.5
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-72 276.9 311 50.5
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.2e-72 276.2 310 49.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.2e-72 276.2 310 49.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.4e-72 274.6 311 50.2
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.7e-71 272.3 310 46.5
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 4.7e-71 272.3 232 59.5
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.4e-70 270.8 290 49.0
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 6.7e-70 268.5 263 49.8
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 8.8e-70 268.1 285 50.9
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.2e-69 267.7 315 45.4
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 5.7e-69 265.4 302 47.7
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 5.7e-69 265.4 302 47.7
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-68 264.2 302 47.4
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.2e-68 263.5 310 46.5
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 3.7e-68 262.7 312 45.2
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 8.2e-68 261.5 294 51.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.1e-67 261.2 262 50.4
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.1e-67 259.2 298 49.3
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 4.5e-66 255.8 275 49.1
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.0e-65 254.6 309 45.3
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.9e-65 253.1 296 46.6
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.1e-64 251.1 263 47.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.5e-64 250.0 281 47.0
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.5e-64 250.0 305 44.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.5e-64 250.0 295 44.7
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 3.2e-64 249.6 302 43.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.6e-63 247.3 295 43.1
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.1e-63 246.9 252 47.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 2.3e-62 243.4 305 43.9
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.3e-62 243.4 261 51.3
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.8e-62 241.9 261 51.0
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 6.8e-62 241.9 261 51.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 5.7e-61 238.8 286 45.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 9.8e-61 238.0 233 52.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.7e-60 237.3 260 48.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.7e-60 237.3 306 43.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.7e-60 236.1 286 44.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 4.8e-60 235.7 290 43.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.4e-59 234.2 275 48.4
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.8e-59 233.8 318 44.0
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.4e-59 233.4 262 45.8
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.4e-59 233.4 310 43.5
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 4.1e-59 232.6 313 43.5
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 7.0e-59 231.9 296 44.6
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 310 43.2
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 310 43.2
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 310 43.2
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 307 43.0
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.7e-58 229.9 310 42.3
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.7e-58 229.9 321 43.0
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.0e-57 228.0 256 46.9
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.7e-57 227.3 297 43.1
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.3e-57 226.9 308 44.5
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 3.8e-57 226.1 272 46.0
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 5.0e-57 225.7 299 43.1
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 2.5e-56 223.4 265 46.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 5.5e-56 222.2 293 43.7
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 5.5e-56 222.2 265 45.7
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.2e-56 221.9 284 44.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 9.5e-56 221.5 235 47.7
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.0e-54 218.0 271 42.8
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 3.0e-54 216.5 273 44.0
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 8.8e-54 214.9 305 41.6
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 2.0e-53 213.8 264 45.5
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.7e-52 210.7 306 41.2
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 6.3e-52 208.8 264 45.5
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.3e-52 208.8 259 45.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.3e-52 208.8 251 45.0
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.4e-51 206.8 285 42.8
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 5.4e-51 205.7 319 43.3
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.2e-50 204.5 281 42.7
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.2e-50 204.5 283 41.7
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.0e-50 203.8 306 43.1
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 2.0e-50 203.8 296 43.2
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.7e-50 203.4 298 41.3
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.5e-50 203.0 314 42.4
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 5.9e-50 202.2 297 43.1
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 2.3e-49 200.3 296 42.2
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.9e-49 199.9 273 40.3
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 3.8e-49 199.5 291 39.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.5e-48 196.8 285 41.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 9.5e-48 194.9 299 41.5
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.6e-47 193.0 234 46.6
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.7e-47 192.6 218 49.1
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-47 192.6 262 41.2
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-47 191.8 269 40.9
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-46 189.9 255 40.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 8.9e-46 188.3 295 41.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 8.9e-46 188.3 295 41.0
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-45 187.6 255 40.8
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-45 187.6 255 40.8
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-45 187.2 255 40.8
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-45 186.8 255 40.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-45 186.8 255 40.4
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-45 186.4 255 40.4
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-45 185.7 255 40.4
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-45 185.7 255 40.8
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-44 184.1 295 41.0
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.7e-44 184.1 295 41.0
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-44 184.1 255 40.8
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 6.4e-44 182.2 295 40.7
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.1e-43 181.4 276 40.6
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 3.5e-42 176.4 316 36.7
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.9e-42 175.6 157 55.4
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.9e-42 175.6 232 42.7
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.0e-41 174.9 172 51.2
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 5.6e-40 169.1 253 39.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 6.2e-39 165.6 244 41.8
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 8.0e-39 165.2 228 42.5
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.6e-37 160.2 245 41.2
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 3.4e-37 159.8 245 41.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.5e-34 149.8 270 37.4
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-33 148.3 164 45.7
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-33 148.3 194 40.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-33 146.7 174 43.7
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.6e-33 145.6 184 41.8
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 7.3e-32 142.1 248 36.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 4.4e-29 132.9 178 40.4
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.7e-28 131.0 141 46.8
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.2e-28 130.6 290 34.8
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.5e-26 123.2 126 54.8
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-25 119.8 146 45.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 5.6e-24 115.9 205 33.2
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.2e-23 114.8 203 36.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-21 107.8 136 44.1
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 3.3e-16 90.1 224 33.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.6e-15 87.8 203 29.1
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.1e-14 85.1 103 44.7
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.9e-12 76.3 86 41.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.0e-09 68.6 147 30.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 1.1e-06 58.5 151 29.1


User provided reference genes

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