Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 7.5e-150 533.9 279 100.0
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 3.1e-95 352.4 261 72.4
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 2.9e-93 345.9 238 74.8
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 9.3e-92 340.9 254 74.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.7e-91 339.3 222 77.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.6e-91 338.6 254 72.4
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.5e-89 333.6 236 72.0
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.3e-89 332.4 240 73.3
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 9.6e-89 330.9 240 74.2
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.3e-88 330.5 258 70.5
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 8.2e-88 327.8 265 64.9
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 4.1e-87 325.5 246 69.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.3e-87 325.1 238 71.4
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.6e-86 322.8 259 66.4
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.4e-86 322.4 265 64.2
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 3.4e-86 322.4 284 64.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 7.6e-86 321.2 284 64.4
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.3e-85 320.5 262 66.4
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.8e-85 318.9 242 70.2
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.1e-84 317.4 264 67.0
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-84 317.4 295 63.4
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.9e-84 316.6 281 63.3
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 9.3e-84 314.3 208 76.9
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.6e-83 312.0 214 77.1
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 4.6e-83 312.0 261 65.5
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.6e-83 312.0 258 66.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 3.9e-82 308.9 202 74.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 3.9e-82 308.9 203 76.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 6.7e-82 308.1 263 63.5
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 8.7e-82 307.8 236 70.3
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.5e-81 307.0 264 62.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.5e-81 307.0 225 69.3
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 9.7e-81 304.3 254 68.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.3e-80 303.9 221 66.1
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.2e-80 303.1 239 68.2
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 6.3e-80 301.6 243 65.8
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.1e-79 300.8 216 73.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.4e-79 300.4 277 61.0
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.8e-79 300.1 235 67.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.1e-79 299.3 209 71.8
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 3.1e-79 299.3 239 64.4
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.1e-79 298.9 285 58.6
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 5.3e-79 298.5 220 67.3
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.2e-78 297.4 222 68.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.6e-78 296.2 239 65.7
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.4e-78 295.8 280 62.1
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 5.9e-78 295.0 242 66.5
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.9e-78 295.0 233 67.0
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.1e-76 290.8 245 63.3
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.5e-76 289.7 241 66.0
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.2e-76 289.3 262 61.1
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 9.4e-76 287.7 202 68.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.6e-75 287.0 217 68.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.6e-75 287.0 213 69.0
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.6e-75 285.8 213 65.7
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.4e-74 283.9 273 59.3
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.4e-74 283.9 231 65.4
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 5.1e-74 282.0 240 61.2
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.7e-74 281.6 241 64.3
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 8.8e-74 281.2 209 67.9
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 8.8e-74 281.2 220 63.6
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.3e-73 279.3 208 68.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.4e-73 278.9 221 65.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.3e-72 277.3 206 70.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.1e-71 272.7 211 65.4
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 3.1e-71 272.7 232 62.9
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.3e-71 271.9 247 61.1
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 5.3e-71 271.9 230 60.4
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.3e-71 271.9 208 67.3
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.5e-70 270.4 258 59.7
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.0e-70 270.0 206 63.6
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.0e-70 270.0 247 57.5
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.7e-69 266.9 211 65.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.2e-69 266.5 211 64.0
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.9e-69 266.2 257 62.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.5e-69 265.0 247 59.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.5e-69 265.0 247 59.9
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.9e-68 263.5 251 55.0
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.5e-68 263.1 250 57.6
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 9.4e-68 261.2 236 59.3
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.7e-67 259.6 248 54.4
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.0e-66 257.7 203 63.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.8e-66 256.9 259 54.4
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.3e-66 256.5 197 66.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.0e-66 256.1 259 54.4
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 5.2e-66 255.4 205 60.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.7e-66 255.0 264 53.4
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.3e-65 252.7 236 59.7
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.3e-65 252.7 236 59.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 3.3e-65 252.7 234 59.4
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 5.7e-65 251.9 267 53.9
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.3e-64 250.8 238 57.1
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.3e-64 250.8 236 59.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.3e-64 250.8 236 59.7
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.3e-64 250.8 208 64.4
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.8e-64 249.6 189 63.0
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.3e-64 248.4 230 56.5
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 8.2e-64 248.1 230 56.5
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.8e-63 246.9 229 56.3
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 3.1e-63 246.1 259 53.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 3.5e-62 242.7 191 61.8
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 4.5e-62 242.3 202 57.9
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 5.9e-62 241.9 230 55.7
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 6.5e-61 238.4 219 56.2
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.1e-60 237.7 251 53.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 2.5e-60 236.5 231 55.0
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 7.2e-60 235.0 213 56.3
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 8.0e-59 231.5 212 58.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-58 230.7 204 59.3
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.8e-58 230.3 231 53.7
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.3e-58 229.9 252 55.6
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.3e-58 229.9 150 76.0
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.0e-57 226.9 202 57.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.5e-57 224.9 213 59.2
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.7e-56 223.8 223 53.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.8e-56 223.0 271 49.4
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.7e-56 222.6 263 49.8
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.7e-56 222.6 263 49.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.7e-56 222.6 181 58.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 6.3e-56 221.9 203 55.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.1e-55 221.1 215 56.3
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.1e-55 221.1 200 58.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.4e-55 219.9 200 57.5
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.0e-55 218.4 266 48.5
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 9.1e-55 218.0 194 59.8
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.1e-52 211.1 221 55.2
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.2e-52 209.1 215 49.3
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-51 207.2 215 48.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.6e-51 207.2 215 48.8
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.7e-51 206.5 215 48.8
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.0e-50 204.5 197 55.8
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 6.8e-50 201.8 209 49.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.5e-49 198.4 229 48.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 9.8e-49 198.0 215 53.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 6.3e-48 195.3 187 50.8
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 6.3e-48 195.3 144 72.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.8e-47 193.7 152 65.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 7.7e-46 188.3 198 53.0
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-45 186.4 202 47.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-45 186.4 202 47.5
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.0e-45 185.7 228 50.0
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.2e-44 181.8 207 46.9
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.6e-43 180.6 207 46.4
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 3.6e-43 179.5 194 51.5
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 6.1e-43 178.7 228 46.5
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.0e-42 177.9 207 44.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 8.8e-42 174.9 272 42.3
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.2e-41 174.5 198 46.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.3e-40 171.0 223 47.5
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.9e-40 169.1 208 45.2
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.6e-38 164.1 220 41.8
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.9e-37 159.8 196 40.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.6e-37 158.3 156 53.2
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.3e-36 156.4 129 62.0
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.2e-35 154.5 274 36.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 3.6e-35 152.9 124 63.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.7e-35 152.5 191 43.5
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.9e-28 130.6 167 43.1
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.6e-27 126.3 167 41.3
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.1e-26 124.8 194 40.7
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.5e-22 109.8 90 66.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.0e-21 108.2 76 76.3
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.3e-18 97.1 97 51.5
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.0e-18 96.3 157 37.6
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 7.5e-17 92.0 69 72.5
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 7.5e-17 92.0 77 59.7
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.7e-13 80.9 67 61.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.5e-12 77.0 63 57.1
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 6.8e-10 68.9 201 23.9
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.9e-08 63.5 42 69.0
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 3.2e-07 60.1 213 23.9


User provided reference genes

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