Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 2.0e-77 292.4 146 100.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 2.7e-66 255.4 150 83.3
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.3e-65 253.1 150 82.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.6e-63 246.1 151 80.8
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 5.3e-62 241.1 150 78.7
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 3.4e-61 238.4 150 78.7
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 7.6e-61 237.3 151 78.1
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 1.7e-60 236.1 149 77.9
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.2e-60 235.7 147 79.6
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 2.9e-60 235.3 145 80.7
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 2.9e-60 235.3 145 81.4
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 3.8e-60 235.0 145 77.9
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 8.4e-60 233.8 147 78.9
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 1.1e-59 233.4 145 77.2
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.4e-59 233.0 146 77.4
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.9e-59 232.6 147 78.2
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 1.9e-59 232.6 147 81.0
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 2.4e-59 232.3 145 77.2
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 2.4e-59 232.3 145 77.2
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.2e-59 231.9 145 77.9
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 4.2e-59 231.5 145 78.6
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 4.2e-59 231.5 145 78.6
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 4.2e-59 231.5 145 78.6
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 4.2e-59 231.5 140 80.0
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 5.4e-59 231.1 146 76.7
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 5.4e-59 231.1 146 79.5
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 7.1e-59 230.7 146 77.4
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 7.1e-59 230.7 149 75.8
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 9.3e-59 230.3 146 77.4
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 9.3e-59 230.3 148 75.7
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.2e-58 229.9 146 77.4
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.6e-58 229.6 146 76.7
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 1.6e-58 229.6 145 76.6
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 1.6e-58 229.6 145 76.6
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 3.5e-58 228.4 146 75.3
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 3.5e-58 228.4 145 76.6
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 3.5e-58 228.4 145 75.9
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 4.6e-58 228.0 149 75.8
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 7.9e-58 227.3 145 75.2
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 7.9e-58 227.3 150 75.3
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 7.9e-58 227.3 145 77.2
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 1.3e-57 226.5 144 77.1
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 1.3e-57 226.5 152 75.0
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 1.8e-57 226.1 150 74.0
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 75.2
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.0e-57 225.3 145 77.9
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.0e-57 225.3 145 77.9
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.0e-57 225.3 146 76.0
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 5.1e-57 224.6 146 76.0
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 6.7e-57 224.2 149 74.5
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.1e-56 223.4 148 77.0
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 1.1e-56 223.4 149 79.2
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.5e-56 223.0 141 78.0
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.9e-56 222.6 141 76.6
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 2.5e-56 222.2 146 74.0
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.5e-56 222.2 148 77.0
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 5.6e-56 221.1 148 76.4
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 5.6e-56 221.1 141 75.9
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 7.4e-56 220.7 146 73.3
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 9.6e-56 220.3 148 76.4
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.3e-55 219.9 140 75.0
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 146 73.3
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 141 75.2
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.6e-55 219.5 141 75.2
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.1e-55 219.2 175 64.6
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.1e-55 219.2 148 75.7
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.8e-55 218.8 151 74.2
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 3.7e-55 218.4 147 74.8
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 3.7e-55 218.4 146 73.3
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.7e-55 218.4 146 74.0
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 6.2e-55 217.6 148 70.9
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.2e-55 217.6 148 75.0
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 6.2e-55 217.6 143 76.9
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 1.1e-54 216.9 134 77.6
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 1.1e-54 216.9 146 72.6
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.1e-54 216.9 140 75.0
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.4e-54 216.5 148 75.0
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.8e-54 216.1 146 74.7
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 2.4e-54 215.7 147 74.8
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 5.3e-54 214.5 148 73.6
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 6.9e-54 214.2 141 75.2
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 9.0e-54 213.8 147 74.1
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.5e-53 213.0 147 73.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 2.0e-53 212.6 140 73.6
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 7.6e-53 210.7 120 79.2
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.7e-52 209.5 115 81.7
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.7e-52 209.5 149 73.2
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 2.2e-52 209.1 114 82.5
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 2.2e-52 209.1 147 71.4
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 2.2e-52 209.1 141 70.9
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 4.9e-52 208.0 143 72.0
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.1e-51 206.8 145 69.7
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.4e-51 206.5 143 72.0
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 1.9e-51 206.1 134 76.1
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 2.4e-51 205.7 148 72.3
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 9.3e-51 203.8 144 68.1
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.7e-50 202.2 148 69.6
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.3e-49 199.1 143 71.3
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.5e-48 195.7 142 69.0
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 3.3e-48 195.3 116 77.6
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 1.1e-46 190.3 113 78.8
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.4e-46 189.1 142 68.3
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.2e-45 186.8 145 65.5
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 1.2e-45 186.8 115 83.5
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.7e-44 183.0 147 63.3
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.5e-43 179.1 145 60.7
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 9.3e-43 177.2 141 63.8
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.1e-42 176.0 148 62.2
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 4.6e-42 174.9 96 81.2
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.0e-41 173.7 86 88.4
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 1.3e-41 173.3 144 61.8
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.0e-41 172.2 119 73.9
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 2.5e-40 169.1 137 64.2
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.7e-40 167.9 114 71.9
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.6e-39 166.4 120 70.8
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.1e-38 162.2 84 86.9
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 3.8e-36 155.2 90 77.8
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 1.2e-34 150.2 117 64.1
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 4.6e-34 148.3 115 67.8
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 8.8e-33 144.1 120 62.5
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.1e-32 143.7 115 69.6
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 2.8e-31 139.0 114 65.8
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 6.9e-30 134.4 122 65.6
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 2.2e-28 129.4 89 67.4
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 5.0e-28 128.3 145 51.0
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 9.4e-27 124.0 90 71.1
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 7.4e-24 114.4 89 61.8
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 1.7e-20 103.2 110 49.1
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 2.0e-16 89.7 137 40.1
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 4.4e-16 88.6 158 40.5
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 7.4e-16 87.8 84 61.9
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.3e-15 87.0 70 72.9
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 1.6e-13 80.1 75 65.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.5e-11 73.6 75 60.0


User provided reference genes

Program Settings