Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.0e-173 611.7 300 100.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 7.4e-119 431.0 288 72.2
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.8e-118 429.1 284 71.5
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.5e-116 423.3 284 70.4
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.5e-116 423.3 288 71.5
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 5.5e-114 414.8 292 70.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.1e-114 414.5 288 69.8
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.5e-113 412.1 288 69.1
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 4.6e-113 411.8 289 69.6
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.0e-113 411.4 288 69.1
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.0e-113 411.4 291 66.7
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.0e-112 410.6 294 67.3
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.3e-112 410.2 276 70.7
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 5.1e-112 408.3 291 67.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 6.7e-112 407.9 289 68.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 8.7e-112 407.5 289 68.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.5e-111 406.8 291 67.0
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 9.6e-111 404.1 289 66.4
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 9.6e-111 404.1 283 68.2
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.6e-110 403.3 291 65.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 8.2e-110 401.0 283 67.8
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.4e-109 399.4 301 63.8
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.1e-109 399.1 285 68.4
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 6.9e-109 397.9 288 65.6
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 6.9e-109 397.9 285 67.0
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 9.0e-109 397.5 282 67.4
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.2e-108 397.1 285 67.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.5e-108 396.7 294 65.0
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.9e-108 394.8 285 66.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.0e-107 394.0 279 67.4
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.3e-107 393.7 288 66.3
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.2e-107 392.9 275 66.2
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 5.0e-107 391.7 282 66.3
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.9e-106 389.8 284 66.2
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 4.2e-106 388.7 279 65.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.2e-105 387.1 266 68.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.2e-105 387.1 287 63.4
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.6e-105 386.7 273 67.0
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.1e-105 384.8 285 66.0
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.9e-105 384.4 276 65.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.3e-104 383.6 279 67.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.3e-104 383.6 283 64.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.3e-104 383.6 285 66.3
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 5.1e-104 381.7 283 67.5
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 6.7e-104 381.3 283 63.3
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.1e-103 380.6 286 63.6
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.5e-103 380.2 275 65.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 7.4e-103 377.9 287 62.7
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 7.4e-103 377.9 290 62.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.3e-102 377.1 283 65.0
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 2.2e-102 376.3 291 64.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.8e-102 375.2 301 62.8
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.1e-101 374.0 293 62.8
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.1e-101 374.0 287 61.7
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.4e-101 373.6 283 65.0
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.8e-101 373.2 280 64.3
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.4e-101 372.9 275 64.7
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.1e-101 372.5 299 59.9
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 5.3e-101 371.7 269 66.2
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 6.9e-101 371.3 252 68.7
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 9.0e-101 370.9 287 61.7
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.5e-100 370.2 288 61.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 3.4e-100 369.0 283 62.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 4.5e-100 368.6 287 62.7
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 7.7e-100 367.9 292 62.0
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 7.7e-100 367.9 284 64.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.3e-99 367.1 275 63.6
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.8e-99 365.5 283 63.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.4e-98 363.6 287 62.0
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.2e-98 362.5 288 60.4
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 4.2e-98 362.1 279 62.0
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.4e-96 357.1 242 69.8
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.8e-96 356.7 288 60.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 5.1e-96 355.1 267 64.0
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.5e-95 353.6 283 61.1
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 9.7e-95 350.9 232 70.3
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.7e-94 349.0 292 59.6
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 8.2e-94 347.8 314 55.7
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.4e-93 346.3 259 64.1
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 4.1e-93 345.5 288 57.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-92 343.6 252 62.3
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.5e-92 342.0 247 67.6
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 7.7e-92 341.3 269 62.5
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.1e-89 333.2 257 64.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.6e-89 332.4 276 59.4
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 8.8e-88 327.8 282 54.3
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.8e-86 322.8 267 56.9
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.8e-85 320.1 261 58.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.1e-85 318.9 277 56.0
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 9.1e-85 317.8 274 55.5
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.8e-78 296.2 285 51.2
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.1e-77 294.3 287 50.2
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.8e-77 293.5 289 50.2
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.4e-77 293.1 271 54.2
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.2e-76 290.8 288 50.7
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-76 290.0 287 50.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-76 290.0 287 50.2
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.0e-76 290.0 236 59.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.5e-76 288.9 272 52.2
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 3.8e-75 285.8 288 49.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 5.0e-75 285.4 294 49.7
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-74 284.3 288 48.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-74 283.5 295 49.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.5e-74 282.0 292 49.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.7e-73 279.6 290 49.3
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-73 278.5 272 50.7
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-72 277.3 272 49.6
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.0e-72 275.8 260 53.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 6.8e-72 275.0 277 49.1
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 6.8e-72 275.0 273 44.7
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 6.3e-70 268.5 250 50.4
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 5.4e-69 265.4 283 47.3
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.9e-68 261.9 269 55.0
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.1e-65 253.4 285 50.5
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.1e-57 226.9 296 41.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-52 210.7 186 51.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.5e-50 203.4 191 50.8
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.0e-48 196.1 237 44.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 4.4e-47 192.6 272 36.4
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.9e-46 189.9 250 39.2
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.0e-43 181.4 228 42.1
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 4.0e-40 169.5 275 39.6
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-38 164.5 192 45.8
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-38 164.1 237 40.9
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 6.4e-38 162.2 180 44.4
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 196 44.9
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-37 159.1 189 46.6
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 9.2e-37 158.3 192 45.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-36 157.9 183 44.3
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 3.5e-36 156.4 196 43.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 6.0e-36 155.6 196 44.9
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 6.0e-36 155.6 241 39.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.0e-32 142.9 139 49.6
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-30 136.7 277 35.7
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.9e-29 134.0 151 43.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 3.2e-29 133.3 139 48.2
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 7.1e-29 132.1 155 44.5
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.6e-28 129.4 207 39.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-24 117.5 192 38.5
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-24 117.5 192 38.5
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.9e-22 110.2 217 33.2
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.3e-19 101.3 191 33.0
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 7.3e-18 95.5 64 64.1
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 7.3e-18 95.5 64 64.1
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 8.1e-17 92.0 80 48.8
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 9.0e-16 88.6 147 40.1
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 4.2e-13 79.7 66 57.6
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.1e-13 79.0 92 48.9


User provided reference genes

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