Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.8e-268 928.7 491 100.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 8.0e-171 604.4 493 67.5
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 2.6e-169 599.4 492 66.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 4.2e-164 582.0 482 63.5
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.6e-163 578.9 441 68.5
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.2e-162 575.1 450 66.9
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 8.8e-162 574.3 496 64.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 6.5e-157 558.1 450 66.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.5e-157 557.8 447 64.4
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-153 547.4 391 68.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 2.6e-153 546.2 493 58.8
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 9.8e-153 544.3 495 61.4
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.7e-152 543.5 392 68.4
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.4e-151 540.4 389 68.4
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.2e-150 537.3 505 58.6
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 5.0e-149 531.9 492 60.6
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.5e-148 529.6 455 59.8
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 2.8e-147 526.2 485 60.0
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.7e-147 525.4 482 57.7
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.8e-146 523.5 493 57.6
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.2e-146 521.9 504 59.7
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 5.7e-145 518.5 486 57.0
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.7e-144 515.8 486 59.7
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 6.3e-144 515.0 488 59.4
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.4e-143 513.8 494 60.1
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.4e-143 513.1 484 57.0
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 9.2e-143 511.1 417 62.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 4.5e-142 508.8 488 55.1
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.0e-141 507.7 483 54.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 2.9e-141 506.1 490 56.3
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 3.9e-141 505.8 483 54.7
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 3.9e-141 505.8 483 54.7
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.1e-140 504.2 488 55.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.5e-140 503.8 436 58.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 3.3e-140 502.7 496 53.4
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 4.3e-140 502.3 492 52.6
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 7.3e-140 501.5 439 61.0
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 9.5e-140 501.1 498 54.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.2e-139 500.7 454 61.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.1e-139 500.0 484 54.8
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.1e-139 500.0 484 54.8
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.8e-139 499.6 483 53.8
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 6.1e-139 498.4 424 60.1
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 8.0e-139 498.0 483 53.8
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.3e-138 496.5 485 54.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.3e-138 496.5 492 53.9
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.0e-138 495.7 424 60.1
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.4e-137 492.3 437 59.0
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 3.7e-136 489.2 445 56.0
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.4e-135 487.3 452 56.0
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.4e-135 487.3 381 61.7
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 5.4e-135 485.3 429 57.3
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 5.4e-135 485.3 485 55.5
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.6e-134 483.8 489 56.9
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.6e-134 483.8 482 54.4
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.5e-134 482.6 485 53.2
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 6.0e-134 481.9 433 55.9
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.7e-133 480.3 442 55.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.0e-133 478.8 431 58.5
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 5.0e-133 478.8 491 52.5
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 7.3e-132 474.9 483 55.5
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 1.2e-131 474.2 494 53.0
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.8e-131 473.0 488 53.7
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 8.0e-131 471.5 484 53.5
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 8.9e-130 468.0 429 55.5
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.6e-129 466.5 368 60.6
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.6e-129 466.5 404 57.2
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 7.5e-129 464.9 397 58.9
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 9.8e-129 464.5 440 52.7
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.0e-125 454.5 346 65.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.3e-125 454.1 420 57.4
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.3e-125 453.4 436 55.5
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 5.1e-125 452.2 499 50.3
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 4.3e-124 449.1 438 52.5
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.2e-123 447.6 451 52.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 4.0e-122 442.6 445 52.1
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.9e-120 436.4 463 50.3
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.1e-119 434.5 448 49.6
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.1e-116 424.5 355 57.7
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.1e-116 424.5 355 57.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.6e-115 420.6 353 56.9
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-114 417.5 413 55.2
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 4.0e-114 416.0 455 49.2
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.2e-111 406.4 359 59.6
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 5.4e-111 405.6 399 49.9
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.7e-109 400.6 348 58.9
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.1e-107 393.7 343 58.3
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 4.8e-107 392.5 359 55.2
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 2.6e-105 386.7 426 49.3
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.4e-105 386.0 336 57.7
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.6e-101 372.1 343 56.0
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 6.9e-90 335.5 429 40.3
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 5.8e-89 332.4 315 58.1
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 8.2e-83 312.0 342 50.9
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 5.8e-81 305.8 267 53.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.9e-69 266.5 396 36.4
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.1e-66 258.5 464 33.2
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.1e-60 238.4 353 37.7
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 2.0e-60 237.7 183 60.1
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 2.6e-60 237.3 300 43.3
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.4e-58 231.5 411 33.8
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.7e-51 208.0 493 34.7
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 5.3e-50 203.0 197 55.3
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 4.5e-49 199.9 294 43.5
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 5.5e-47 193.0 385 32.5
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.2e-40 171.0 167 53.3
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.4e-39 165.6 169 56.8
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.4e-37 161.8 167 51.5
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 3.8e-32 143.7 207 41.5
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 4.0e-13 80.5 110 45.5
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.6e-08 63.2 62 45.2
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 8.6e-08 62.8 85 55.3
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.5e-07 62.0 55 52.7
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 2.5e-07 61.2 80 58.8
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 3.3e-07 60.8 79 53.2
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.3e-07 60.8 92 47.8
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.3e-07 59.7 92 46.7
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 7.3e-07 59.7 46 60.9


User provided reference genes

Program Settings