Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0364 Cannabis sativa HOM05D008880 ORTHO05D011235 8.7e-57 223.4 112 100.0
CANSAT21G0142 Cannabis sativa HOM05D008880 ORTHO05D011235 2.9e-44 181.8 111 80.2
CANSAT64G2389 Cannabis sativa HOM05D008880 ORTHO05D011235 1.1e-43 179.9 111 78.4
CANSAT25G1515 Cannabis sativa HOM05D008880 ORTHO05D011235 2.5e-43 178.7 108 82.4
CANSAT01G1740 Cannabis sativa HOM05D008880 ORTHO05D011235 1.1e-40 169.9 104 78.8
CANSAT80G1402 Cannabis sativa HOM05D008880 ORTHO05D011235 3.7e-39 164.9 111 73.9
CANSAT21G1096 Cannabis sativa HOM05D008880 ORTHO05D011235 2.4e-38 162.2 111 73.9
CANSAT11G0103 Cannabis sativa HOM05D008880 ORTHO05D011235 2.9e-36 155.2 111 71.2
CANSAT64G2049 Cannabis sativa HOM05D008880 ORTHO05D011235 1.4e-35 152.9 82 90.2
CANSAT11G0442 Cannabis sativa HOM05D008880 ORTHO05D011235 4.7e-34 147.9 111 69.4
CANSAT35G0612 Cannabis sativa HOM05D008880 ORTHO05D011235 1.0e-33 146.7 111 64.9
CANSAT80G2087 Cannabis sativa HOM05D008880 ORTHO05D011235 5.3e-30 134.4 111 67.6
CANSAT64G2559 Cannabis sativa HOM05D008880 ORTHO05D011235 9.1e-30 133.7 111 66.7
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 6.1e-26 120.9 71 84.5
CANSAT11G0473 Cannabis sativa HOM05D008880 ORTHO05D011235 1.8e-25 119.4 78 79.5
CANSAT21G0969 Cannabis sativa HOM05D008880 ORTHO05D011235 4.0e-17 91.7 109 52.3
MELO3C029617.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.1e-14 83.6 105 40.0
TWI56G0460 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 2.0e-13 79.3 108 37.0
Atru.chr6.681 Acer truncatum HOM05D008880 ORTHO05D011235 1.3e-12 76.6 79 39.2
TWI34G1618 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 1.3e-12 76.6 101 35.6
Sopen01g006740 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen01g021410 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen02g017450 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen04g011600 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen04g018310 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen04g023650 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen04g026340 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen05g009710 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen05g021830 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen05g028350 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen07g002700 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen07g019940 Solanum pennellii HOM05D008880 ORTHO05D001544 2.9e-12 75.5 101 33.7
Sopen09g020870 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen11g015120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen11g015130 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen12g003850 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen12g003860 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen12g023960 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
Sopen12g023970 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 33.7
TWI56G0777 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 2.9e-12 75.5 108 34.3
MELO3C030135.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.8e-12 75.1 91 38.5
MELO3C034480.2 Cucumis melo HOM05D013798 ORTHO05D011235 6.5e-12 74.3 79 41.8
Sopen05g014770 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-12 73.9 101 32.7
SGA_v2.0_scaffold43G16507 Striga asiatica HOM05D000002 ORTHO05D000001 1.1e-11 73.6 108 32.4
CANSAT54G0185 Cannabis sativa HOM05D008880 ORTHO05D011235 1.5e-11 73.2 37 94.6
PGR031G1414 Punica granatum HOM05D008880 ORTHO05D001544 2.5e-11 72.4 109 33.0
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.2e-11 72.0 98 34.7
Sopen10g016600 Solanum pennellii HOM05D000002 ORTHO05D001544 3.2e-11 72.0 101 31.7
Sopen10g013010 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-11 71.2 101 32.7
Sopen11g023840 Solanum pennellii HOM05D000002 ORTHO05D000001 3.6e-10 68.6 101 32.7
GSVIVG01013341001 Vitis vinifera HOM05D000168 ORTHO05D001351 1.0e-09 67.0 79 46.8
PGR031G0672 Punica granatum HOM05D000002 ORTHO05D001544 1.4e-09 66.6 109 31.2
SGA_v2.0_scaffold48G17859 Striga asiatica HOM05D000002 ORTHO05D000001 1.4e-09 66.6 98 30.6
MELO3C035074.2 Cucumis melo HOM05D008649 ORTHO05D009980 2.3e-09 65.9 106 34.0
TWI53G0611 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 3.0e-09 65.5 95 34.7
Atru.chr1.2215 Acer truncatum HOM05D000002 ORTHO05D000001 6.8e-09 64.3 106 28.3
PGR004G1810 Punica granatum HOM05D008880 ORTHO05D001544 8.8e-09 63.9 109 33.0
Sopen12g025090 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-09 63.9 75 36.0
Sopen08g011630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-08 61.6 101 28.7
Sopen08g011640 Solanum pennellii HOM05D008880 ORTHO05D001544 4.4e-08 61.6 101 28.7
Sopen07g011850 Solanum pennellii HOM05D000002 ORTHO05D001544 5.7e-08 61.2 101 28.7
PGR070G0004 Punica granatum HOM05D008880 ORTHO05D001544 1.7e-07 59.7 100 29.0
ECA248G3129 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-07 59.3 104 32.7
ECA234G1927 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-07 58.9 104 31.7
ECA238G1847 Erigeron canadensis HOM05D000002 ORTHO05D001544 2.8e-07 58.9 104 31.7
Manes.17G029910 Manihot esculenta HOM05D008880 ORTHO05D001544 4.8e-07 58.2 101 29.7
TWI48G0001 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 1.4e-06 56.6 105 32.4
Manes.18G141009 Manihot esculenta HOM05D000002 ORTHO05D001544 1.8e-06 56.2 69 42.0
RcHm_v2.0_Chr1g0336961 Rosa chinensis HOM05D000002 ORTHO05D001134 2.4e-06 55.8 102 33.3
RcHm_v2.0_Chr3g0496001 Rosa chinensis HOM05D000002 ORTHO05D001134 4.1e-06 55.1 89 33.7
RcHm_v2.0_Chr5g0082051 Rosa chinensis HOM05D000002 ORTHO05D001134 4.1e-06 55.1 89 33.7
Sopen07g019310 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-06 55.1 64 39.1
Manes.03G069116 Manihot esculenta HOM05D000002 ORTHO05D001544 5.4e-06 54.7 107 34.6
Manes.06G038551 Manihot esculenta HOM05D000002 ORTHO05D001544 5.4e-06 54.7 107 34.6
RcHm_v2.0_Chr3g0468531 Rosa chinensis HOM05D000002 ORTHO05D001134 7.0e-06 54.3 102 37.3
Sed0018520 Sechium edule HOM05D013798 ORTHO05D011235 7.0e-06 54.3 70 37.1
FvH4_3g13432 Fragaria vesca HOM05D000002 ORTHO05D000001 9.1e-06 53.9 89 32.6
Manes.17G026082 Manihot esculenta HOM05D000002 ORTHO05D001544 9.1e-06 53.9 107 33.6
RcHm_v2.0_Chr1g0345341 Rosa chinensis HOM05D000002 ORTHO05D001134 9.1e-06 53.9 89 31.5


User provided reference genes

Program Settings