Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 2337.0 1282 100.0
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1613.6 1214 69.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1596.6 1182 72.1
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1590.5 1172 71.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1580.5 1221 68.9
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1579.7 1207 68.9
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1556.2 1292 64.9
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1555.0 1219 66.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1552.3 1328 62.9
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1178 70.6
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1541.2 1228 68.4
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1173 70.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1534.2 1215 67.5
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1530.4 1220 66.1
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1528.1 1215 66.6
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1527.7 1290 64.0
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1524.6 1291 63.7
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1515.0 1173 69.8
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1515.0 1289 63.6
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1514.6 1234 65.4
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1514.2 1289 63.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1513.8 1220 66.2
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1510.0 1220 65.8
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1508.4 1246 65.7
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1507.3 1363 62.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1501.9 1274 63.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1497.6 1286 62.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1496.1 1213 65.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1490.7 1289 63.5
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1488.4 1225 64.3
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1219 65.7
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1286 62.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1229 64.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1230 65.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1482.2 1273 63.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1479.2 1213 64.6
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1473.0 1186 64.8
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1469.9 1221 64.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1468.8 1221 65.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1464.9 1212 64.5
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1463.0 1213 63.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1462.2 1214 64.7
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1461.8 1291 61.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1458.7 1292 62.3
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1458.4 1176 65.2
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1453.3 1224 64.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1444.5 1216 64.3
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1292 60.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1440.2 1200 63.4
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1248 63.5
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1437.6 1226 62.7
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1437.2 1216 62.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1430.6 1223 62.1
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1429.5 1361 59.4
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1424.8 1221 62.5
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1416.7 1233 62.8
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1413.7 1306 59.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1411.7 1224 64.1
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1401.3 1215 61.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1204 63.3
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1384.4 1212 61.5
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1294 59.2
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1370.1 1212 61.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1223 60.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1367.4 1230 60.2
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1367.1 1147 64.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1358.6 1233 59.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1356.7 1225 61.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1356.3 1212 60.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1350.9 1216 60.1
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1237 59.9
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1177 60.7
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1349.0 1306 60.1
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1348.2 1303 59.6
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1338.2 1181 61.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1337.4 1191 60.5
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1206 60.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1332.4 1182 60.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1330.1 1224 58.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1313 56.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1320.8 1183 59.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1313.1 1179 60.5
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1313.1 1179 60.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1312.0 1279 57.3
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1310.0 1204 58.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1308.5 1243 57.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1305.4 1205 59.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1303.9 1179 59.7
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1295.0 1222 58.8
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1291.6 1247 56.9
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1279.6 1215 58.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1255.0 1059 61.9
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1253.4 1165 59.2
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1246.1 1250 55.8
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1167.1 1215 54.7
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1164.1 1207 54.0
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1153.7 1212 52.7
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1132.1 1288 50.7
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1129.4 1224 53.5
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1124.4 1212 52.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1122.8 1060 59.3
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1109.0 1262 50.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.9e-310 1068.5 937 62.6
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 3.9e-310 1068.5 1207 49.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.4e-304 1049.3 1237 49.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.5e-288 996.1 1230 47.9
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 7.9e-287 991.1 1217 47.2
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 3.9e-286 988.8 731 70.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.8e-251 873.6 641 69.7
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 4.4e-229 799.3 1225 41.6
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.6e-226 790.8 1100 43.9
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 9.0e-174 615.5 530 65.7
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 8.7e-169 599.0 435 71.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 7.9e-162 575.9 1176 35.2
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.0e-161 575.5 1227 34.6
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 5.9e-157 559.7 816 46.8
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-155 555.4 682 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.0e-149 534.6 1236 32.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.2e-148 531.2 452 64.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 6.5e-148 529.6 1214 33.2
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.3e-140 505.4 610 47.7
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.5e-139 501.1 435 62.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 4.7e-138 496.9 1134 32.8
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 4.1e-134 483.8 1222 30.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 5.0e-116 423.7 1046 32.3
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.5e-109 401.0 1281 27.6
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 4.7e-106 390.6 1041 31.4
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.0e-80 305.4 247 62.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-73 283.1 314 51.9
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 5.8e-72 277.3 501 35.7
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 8.4e-71 273.5 483 36.4
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 5.1e-44 184.5 1200 24.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.9e-43 182.6 217 51.2
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 9.4e-38 163.7 1239 23.7
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.7e-34 152.9 382 29.1
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 6.3e-34 151.0 141 62.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 8.0e-29 134.0 92 69.6
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.8e-28 130.6 128 51.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.3e-23 116.7 188 39.9
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 6.7e-20 104.4 127 42.5
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.2e-18 99.4 124 42.7
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.7e-16 92.4 112 51.8
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.7e-16 92.4 61 75.4
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 5.9e-16 91.3 85 55.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.8e-15 88.6 84 61.9
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 6.1e-13 81.3 71 57.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 8.0e-13 80.9 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 8.0e-13 80.9 53 73.6
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.0e-11 76.3 191 31.4
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 2.8e-10 72.4 82 40.2
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.7e-08 65.9 55 61.8
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 5.9e-08 64.7 83 43.4
Glyma.11G134400 Glycine max HOM05D033723 ORTHO05D214704 1.7e-07 63.2 65 55.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 5.0e-07 61.6 95 41.1
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 9.5e-06 57.4 51 52.9


User provided reference genes

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