Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0308 Cannabis sativa HOM05D000539 ORTHO05D000233 4.7e-119 431.4 248 100.0
CANSAT01G2601 Cannabis sativa HOM05D000539 ORTHO05D000233 1.4e-67 260.4 267 63.3
CANSAT54G0698 Cannabis sativa HOM05D000539 ORTHO05D000233 3.5e-42 176.0 157 59.9
CANSAT54G2622 Cannabis sativa HOM05D000539 ORTHO05D000233 1.9e-40 170.2 242 45.0
CANSAT25G2736 Cannabis sativa HOM05D000539 ORTHO05D000233 5.6e-40 168.7 158 57.6
CANSAT11G2234 Cannabis sativa HOM05D000539 ORTHO05D000233 6.0e-34 148.7 180 45.6
CANSAT54G1138 Cannabis sativa HOM05D000539 ORTHO05D000233 7.9e-34 148.3 92 81.5
CANSAT35G1647 Cannabis sativa HOM05D000539 ORTHO05D000233 2.1e-31 140.2 140 52.9
CANSAT25G3580 Cannabis sativa HOM05D000539 ORTHO05D000233 6.9e-30 135.2 140 47.9
CANSAT54G2172 Cannabis sativa HOM05D011076 ORTHO05D011884 4.6e-26 122.5 76 82.9
CANSAT56G2878 Cannabis sativa HOM05D000539 ORTHO05D000233 1.8e-25 120.6 162 42.0
CANSAT56G0917 Cannabis sativa HOM05D000539 ORTHO05D000233 5.9e-21 105.5 62 85.5
CANSAT78G1856 Cannabis sativa HOM05D011076 ORTHO05D011884 1.0e-20 104.8 153 58.8
CANSAT21G2181 Cannabis sativa HOM05D000539 ORTHO05D000233 1.3e-20 104.4 111 44.1
Hma1.2p1_1437F.1_g283240 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 4.6e-18 95.9 170 36.5
Hma1.2p1_2026F.1_g311550 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 1.4e-17 94.4 140 40.0
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 2.4e-14 83.6 133 38.3
Hma1.2p1_0013F.1_g008410 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.7e-13 78.6 130 36.9
CANSAT56G2121 Cannabis sativa HOM05D000539 ORTHO05D000233 1.9e-11 73.9 153 34.6
CANSAT80G0158 Cannabis sativa HOM05D000539 ORTHO05D000233 3.2e-11 73.2 121 39.7
Aqoxy3G01843 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 4.2e-11 72.8 157 33.1
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 5.5e-11 72.4 109 39.4
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 9.4e-11 71.6 121 34.7
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 9.4e-11 71.6 134 35.1
Aqoxy3G02370 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 2.7e-10 70.1 132 37.1
RcHm_v2.0_Chr4g0417051 Rosa chinensis HOM05D000539 ORTHO05D000233 3.6e-10 69.7 143 32.2
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 4.7e-10 69.3 87 42.5
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 4.7e-10 69.3 141 31.9
RhsimUnG0218400 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.1e-10 68.9 83 43.4
CANSAT01G0116 Cannabis sativa HOM05D000539 ORTHO05D000233 7.9e-10 68.6 131 35.1
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 7.9e-10 68.6 119 34.5
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-10 68.6 118 33.1
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 7.9e-10 68.6 80 43.8
CANSAT01G1682 Cannabis sativa HOM05D000539 ORTHO05D011884 1.0e-09 68.2 90 50.0
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-09 68.2 118 34.7
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-09 68.2 118 37.3
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 1.4e-09 67.8 177 31.6
RcHm_v2.0_Chr2g0145261 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-09 67.8 136 33.1
RcHm_v2.0_Chr4g0395771 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-09 67.8 118 38.1
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-09 67.8 118 33.9
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-09 67.4 119 33.6
FvH4_4g15803 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-09 67.0 98 40.8
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-09 67.0 141 31.2
Hma1.2p1_0043F.1_g025950 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 3.0e-09 66.6 72 45.8
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 3.9e-09 66.2 117 35.9
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 3.9e-09 66.2 136 33.1
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 5.1e-09 65.9 98 40.8
RcHm_v2.0_Chr5g0071741 Rosa chinensis HOM05D000539 ORTHO05D000233 5.1e-09 65.9 103 36.9
CANSAT25G3256 Cannabis sativa HOM05D013932 ORTHO05D000233 8.8e-09 65.1 177 30.5
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.1e-08 64.7 93 40.9
FvH4_4g05701 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-08 64.7 117 33.3
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.1e-08 64.7 117 38.5
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.1e-08 64.7 117 38.5
RcHm_v2.0_Chr7g0228371 Rosa chinensis HOM05D000539 ORTHO05D000233 1.1e-08 64.7 104 36.5
FvH4_3g14252 Fragaria vesca HOM05D000539 ORTHO05D000592 1.5e-08 64.3 110 36.4
Atru.chr6.156 Acer truncatum HOM05D000616 ORTHO05D000233 2.0e-08 63.9 88 37.5
ECA236G4222 Erigeron canadensis HOM05D000616 ORTHO05D000233 2.0e-08 63.9 113 36.3
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 2.0e-08 63.9 110 32.7
RcHm_v2.0_Chr1g0340611 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-08 63.9 118 33.1
RcHm_v2.0_Chr5g0072071 Rosa chinensis HOM05D000539 ORTHO05D000592 3.3e-08 63.2 161 34.2
Ciclev10024249m.g Citrus clementina HOM05D000539 ORTHO05D000233 4.4e-08 62.8 85 42.4
RcHm_v2.0_Chr3g0460901 Rosa chinensis HOM05D000539 ORTHO05D000233 4.4e-08 62.8 105 32.4
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 5.7e-08 62.4 118 32.2
Hma1.2p1_0096F.1_g047665 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.4e-08 62.0 65 46.2
Hma1.2p1_0409F.1_g146975 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.4e-08 62.0 65 46.2
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 7.4e-08 62.0 118 33.1
FvH4_4g09773 Fragaria vesca HOM05D000539 ORTHO05D000233 9.7e-08 61.6 110 35.5
RcHm_v2.0_Chr5g0066151 Rosa chinensis HOM05D000539 ORTHO05D000233 9.7e-08 61.6 94 35.1
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 1.3e-07 61.2 58 51.7
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-07 61.2 99 36.4
Ciclev10023560m.g Citrus clementina HOM05D000539 ORTHO05D000233 1.7e-07 60.8 118 37.3
FvH4_3g18051 Fragaria vesca HOM05D000539 ORTHO05D000592 1.7e-07 60.8 117 30.8
FvH4_4g09212 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-07 60.8 98 35.7
FAN19G1975 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.7e-07 60.8 110 34.5
Hma1.2p1_0473F.1_g160240 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 1.7e-07 60.8 110 36.4
FvH4_6g22902 Fragaria vesca HOM05D000539 ORTHO05D000233 2.2e-07 60.5 80 41.2
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 2.2e-07 60.5 105 31.4
CANSAT80G0104 Cannabis sativa HOM05D009806 ORTHO05D000233 2.8e-07 60.1 117 32.5
FvH4_3g26442 Fragaria vesca HOM05D000539 ORTHO05D000233 2.8e-07 60.1 84 38.1
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 2.8e-07 60.1 58 50.0
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-07 60.1 105 35.2
FvH4_2g07751 Fragaria vesca HOM05D000539 ORTHO05D000233 3.7e-07 59.7 134 30.6
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 3.7e-07 59.7 141 29.1
FvH4_5g31943 Fragaria vesca HOM05D000539 ORTHO05D000233 3.7e-07 59.7 137 27.7
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 3.7e-07 59.7 99 39.4
RcHm_v2.0_Chr7g0201281 Rosa chinensis HOM05D000539 ORTHO05D000233 3.7e-07 59.7 154 32.5
CANSAT54G2529 Cannabis sativa HOM05D009806 ORTHO05D000233 4.8e-07 59.3 117 31.6
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 4.8e-07 59.3 150 29.3
FvH4_7g02993 Fragaria vesca HOM05D000539 ORTHO05D000233 4.8e-07 59.3 139 30.2
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.8e-07 59.3 130 32.3
vmacro01527 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 4.8e-07 59.3 50 54.0
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 6.3e-07 58.9 187 29.9
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 6.3e-07 58.9 116 29.3
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 6.3e-07 58.9 149 27.5
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 8.2e-07 58.5 87 40.2
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 8.2e-07 58.5 117 35.9
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 8.2e-07 58.5 105 34.3
AUR62024140 Chenopodium quinoa HOM05D007123 ORTHO05D000233 1.1e-06 58.2 102 36.3
AUR62033761 Chenopodium quinoa HOM05D007123 ORTHO05D000233 1.4e-06 57.8 102 35.3
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.4e-06 57.8 117 30.8
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 1.4e-06 57.8 79 39.2
PSO349G0027 Papaver somniferum HOM05D010375 ORTHO05D000233 1.4e-06 57.8 123 35.8
PSO478G4356 Papaver somniferum HOM05D010375 ORTHO05D015177 1.4e-06 57.8 123 35.8
PSO700G0133 Papaver somniferum HOM05D010375 ORTHO05D015177 1.4e-06 57.8 123 35.8
PSO717G0128 Papaver somniferum HOM05D010375 ORTHO05D015177 1.4e-06 57.8 123 35.8
PSO724G0047 Papaver somniferum HOM05D010375 ORTHO05D000233 1.4e-06 57.8 123 35.8
PSO724G0607 Papaver somniferum HOM05D010375 ORTHO05D000233 1.4e-06 57.8 123 35.8
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 1.4e-06 57.8 75 44.0
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-06 57.8 95 41.1
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 1.8e-06 57.4 162 31.5
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 1.8e-06 57.4 95 37.9
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.8e-06 57.4 80 43.8
CANSAT64G2228 Cannabis sativa HOM05D009806 ORTHO05D013821 2.4e-06 57.0 117 30.8
FvH4_2g07146 Fragaria vesca HOM05D000539 ORTHO05D000233 2.4e-06 57.0 84 36.9
FAN05G5337 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-06 57.0 116 33.6
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-06 57.0 116 33.6
AUR62039333 Chenopodium quinoa HOM05D007123 ORTHO05D000233 3.1e-06 56.6 98 34.7
RcHm_v2.0_Chr6g0286411 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-06 56.6 100 35.0
CANSAT54G1566 Cannabis sativa HOM05D000539 ORTHO05D000233 4.1e-06 56.2 153 30.7
FvH4_6g53024 Fragaria vesca HOM05D000539 ORTHO05D000233 4.1e-06 56.2 110 33.6
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.1e-06 56.2 116 29.3
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-06 56.2 95 41.1
MELO3C032476.2 Cucumis melo HOM05D000539 ORTHO05D000233 5.3e-06 55.8 119 32.8
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 5.3e-06 55.8 117 29.9
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.3e-06 55.8 103 36.9
FAN28G0890 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.3e-06 55.8 130 31.5
TPR.G7531 Trifolium pratense HOM05D009291 ORTHO05D010716 5.3e-06 55.8 115 31.3
EL10Ac4g08550 Beta vulgaris HOM05D007123 ORTHO05D000233 7.0e-06 55.5 172 28.5
FAN07G0889 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.0e-06 55.5 116 33.6
FAN24G0755 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-06 55.5 84 35.7
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.0e-06 55.5 175 32.6
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 7.0e-06 55.5 95 40.0
RcHm_v2.0_Chr2g0132431 Rosa chinensis HOM05D000539 ORTHO05D000233 7.0e-06 55.5 76 36.8
EL10Ac2g03482 Beta vulgaris HOM05D007123 ORTHO05D000233 9.1e-06 55.1 168 28.6
FAN04G1988 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.1e-06 55.1 175 32.6
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.1e-06 55.1 116 32.8
FAN16G1455 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.1e-06 55.1 175 32.6
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-06 55.1 175 32.6
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-06 55.1 175 32.6


User provided reference genes

Program Settings