Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.5e-107 392.9 208 100.0
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.3e-77 293.5 189 77.2
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.7e-77 292.0 188 78.2
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 3.7e-77 292.0 188 77.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 3.1e-76 288.9 188 76.6
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.1e-76 288.9 188 75.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 5.3e-76 288.1 190 76.8
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.7e-74 283.1 186 75.8
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 2.9e-74 282.3 186 73.1
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 8.5e-74 280.8 188 73.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.1e-73 280.4 188 73.4
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.5e-73 280.0 185 73.5
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.5e-73 280.0 186 75.8
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.9e-73 279.6 188 73.9
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 4.2e-73 278.5 191 71.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 7.2e-73 277.7 192 67.7
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.2e-72 276.9 189 74.1
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.2e-72 276.9 187 73.8
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.6e-72 276.6 187 73.8
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.6e-72 276.6 193 69.4
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 2.1e-72 276.2 187 72.2
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 2.1e-72 276.2 186 72.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 2.1e-72 276.2 189 72.5
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 2.1e-72 276.2 187 73.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.7e-72 275.8 193 69.4
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.6e-72 275.4 190 70.5
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.0e-71 273.9 189 72.0
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.8e-71 273.1 189 72.0
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.3e-71 272.7 187 73.3
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.3e-71 272.7 192 69.8
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-70 270.4 189 71.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-70 270.4 189 71.4
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-70 270.4 186 71.0
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.5e-70 270.0 191 71.2
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.5e-70 270.0 185 71.9
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.5e-70 270.0 187 72.7
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 2.6e-70 269.2 189 71.4
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.4e-70 268.5 188 71.3
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 7.5e-70 267.7 187 71.1
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 9.8e-70 267.3 188 68.1
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.3e-69 266.9 193 67.4
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.7e-69 266.5 193 66.8
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.7e-69 266.5 193 68.4
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.2e-69 266.2 185 71.4
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.2e-69 266.2 185 71.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 2.2e-69 266.2 181 70.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 2.8e-69 265.8 175 76.6
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 3.7e-69 265.4 183 71.0
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 4.8e-69 265.0 192 66.7
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 6.3e-69 264.6 190 66.8
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 6.3e-69 264.6 188 68.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 8.3e-69 264.2 188 70.7
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.1e-68 263.8 184 72.3
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.8e-68 263.1 192 66.1
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.8e-68 263.1 185 70.3
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 2.4e-68 262.7 188 68.1
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.1e-68 261.9 187 69.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.4e-68 261.5 183 72.7
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 7.0e-68 261.2 186 69.4
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.0e-68 261.2 186 69.9
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 9.1e-68 260.8 184 70.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.2e-67 260.4 174 73.0
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.6e-67 260.0 188 66.5
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.0e-67 259.6 188 67.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.0e-67 259.6 182 72.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.5e-67 258.8 189 67.7
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.5e-67 258.8 191 67.5
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 5.9e-67 258.1 184 71.2
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 5.9e-67 258.1 188 67.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 5.9e-67 258.1 189 67.7
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 5.9e-67 258.1 191 67.5
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.7e-67 257.7 185 70.3
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.7e-66 256.5 185 67.6
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.7e-66 256.5 173 71.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.3e-66 256.1 181 70.2
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 3.8e-66 255.4 182 68.7
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 5.0e-66 255.0 185 67.6
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.9e-65 253.1 166 72.3
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.3e-65 252.3 189 69.3
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 4.2e-65 251.9 190 65.8
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 4.2e-65 251.9 191 64.4
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 5.5e-65 251.5 188 66.0
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 5.5e-65 251.5 188 66.0
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 5.5e-65 251.5 182 66.5
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 7.2e-65 251.1 191 64.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 9.5e-65 250.8 189 68.8
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.2e-64 250.4 192 63.0
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.6e-64 250.0 147 78.9
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.6e-64 250.0 184 67.9
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.1e-64 249.6 188 64.9
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.8e-64 249.2 185 67.0
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 3.6e-64 248.8 188 64.4
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 3.6e-64 248.8 188 64.4
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 3.6e-64 248.8 188 64.4
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.0e-63 247.3 182 67.0
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 6.8e-63 244.6 184 63.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 8.9e-63 244.2 185 68.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.3e-61 240.4 179 64.8
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.7e-61 240.0 179 65.9
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 3.1e-60 235.7 182 63.2
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 3.3e-57 225.7 160 68.1
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.0e-54 216.5 123 79.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 8.3e-53 211.1 203 54.2
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.4e-52 210.3 188 58.5
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 4.1e-52 208.8 177 61.0
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.5e-51 205.7 150 65.3
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.3e-50 203.8 170 57.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.6e-48 196.8 189 56.1
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.1e-48 196.4 183 55.7
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 3.6e-48 195.7 154 62.3
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.4e-47 193.7 123 75.6
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.8e-47 193.4 122 75.4
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 5.2e-47 191.8 181 56.9
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.9e-45 186.0 128 72.7
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.4e-44 183.7 150 59.3
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.4e-44 183.7 181 54.1
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 6.0e-43 178.3 146 58.9
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 2.3e-42 176.4 149 59.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.1e-39 167.5 126 68.3
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 6.8e-39 164.9 190 52.1
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 4.6e-35 152.1 129 54.3
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 8.6e-34 147.9 83 84.3
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.8e-32 142.9 91 73.6
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.1e-31 141.0 133 51.1
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.9e-29 132.9 146 45.2
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 9.2e-28 127.9 188 43.6
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 9.2e-28 127.9 188 43.6
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.0e-26 122.9 173 41.6
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.3e-25 119.4 183 39.3
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.9e-20 103.6 86 62.8
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 2.1e-19 100.1 173 37.0
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.6e-19 99.0 51 88.2
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 2.3e-18 96.7 142 40.8
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.5e-17 94.0 164 35.4
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.6e-16 90.5 61 70.5
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.3e-10 70.1 55 60.0


User provided reference genes

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