Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.5e-68 262.7 128 100.0
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 7.9e-62 240.4 133 87.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 3.9e-61 238.0 132 87.1
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 6.7e-61 237.3 128 87.5
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 5.6e-60 234.2 134 84.3
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.3e-59 233.0 131 87.0
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.1e-59 232.3 128 85.9
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.8e-59 231.9 129 85.3
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.7e-59 231.5 130 85.4
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 1.1e-58 229.9 128 84.4
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.1e-58 229.9 128 84.4
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.8e-58 229.2 128 82.0
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 2.4e-58 228.8 128 84.4
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 3.1e-58 228.4 130 83.8
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.1e-58 228.4 128 83.6
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.1e-58 228.4 128 83.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.0e-58 228.0 131 84.0
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 4.0e-58 228.0 131 84.0
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 4.0e-58 228.0 131 84.0
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 4.0e-58 228.0 131 84.0
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 6.9e-58 227.3 130 83.1
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 6.9e-58 227.3 128 80.5
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 9.0e-58 226.9 129 86.0
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 9.0e-58 226.9 128 83.6
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.5e-57 226.1 128 85.2
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.5e-57 226.1 129 82.9
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.0e-57 225.7 128 80.5
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.0e-57 225.7 130 83.8
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.0e-57 225.7 128 83.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.6e-57 225.3 128 80.5
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.6e-57 225.3 130 83.1
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.6e-57 225.3 130 83.1
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.8e-57 224.2 130 82.3
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 7.6e-57 223.8 128 83.6
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 1.0e-56 223.4 127 86.6
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.0e-56 223.4 130 81.5
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.3e-56 223.0 129 86.0
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.3e-56 223.0 129 86.0
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.7e-56 222.6 129 86.0
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.2e-56 222.2 129 85.3
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.2e-56 222.2 130 82.3
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.2e-56 222.2 128 79.7
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 2.9e-56 221.9 132 81.8
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.9e-56 221.9 128 82.0
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.8e-56 221.5 128 77.3
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.9e-56 221.1 133 81.2
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.9e-56 221.1 130 82.3
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.5e-56 220.7 131 81.7
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.1e-55 219.9 130 81.5
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.1e-55 219.9 133 81.2
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.4e-55 219.5 131 81.7
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.4e-55 219.5 132 80.3
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.9e-55 219.2 128 79.7
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.9e-55 219.2 130 80.0
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.9e-55 219.2 131 81.7
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.9e-55 219.2 129 81.4
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 1.9e-55 219.2 128 82.8
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 2.5e-55 218.8 129 82.9
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.5e-55 218.8 132 81.8
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 2.5e-55 218.8 128 82.0
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 4.2e-55 218.0 134 79.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.5e-55 217.6 130 80.0
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 7.1e-55 217.2 130 79.2
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 7.1e-55 217.2 128 81.2
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 9.3e-55 216.9 130 78.5
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 9.3e-55 216.9 134 79.9
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.2e-54 216.5 128 81.2
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.2e-54 216.5 131 77.9
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.1e-54 215.7 129 82.9
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 3.5e-54 214.9 120 82.5
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 4.6e-54 214.5 131 77.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.6e-54 214.5 128 80.5
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.6e-54 214.5 128 78.9
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 4.6e-54 214.5 133 79.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 6.0e-54 214.2 129 79.8
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 7.9e-54 213.8 133 76.7
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 1.0e-53 213.4 128 78.9
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.3e-53 213.0 133 76.7
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-53 213.0 130 81.5
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 133 76.7
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.3e-53 212.2 133 75.9
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.3e-53 212.2 132 77.3
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 128 77.3
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.0e-53 211.8 133 76.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.0e-53 211.8 133 75.9
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 3.9e-53 211.5 129 75.2
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 76.9
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 76.9
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 77.5
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 79.8
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 6.7e-53 210.7 131 75.6
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 6.7e-53 210.7 134 73.9
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.1e-52 209.9 129 79.8
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.1e-52 209.9 133 75.2
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.1e-52 209.9 130 76.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.1e-52 209.9 128 77.3
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 75.2
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 74.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 74.4
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.5e-52 209.5 130 80.0
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.9e-52 209.1 134 74.6
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 2.5e-52 208.8 128 75.8
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 2.5e-52 208.8 128 76.6
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.5e-52 208.8 134 74.6
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.5e-52 208.8 133 74.4
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.5e-52 208.8 127 78.7
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.5e-52 208.8 129 76.7
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.3e-52 208.4 128 75.8
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.3e-52 208.4 128 77.3
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 78.5
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.7e-52 207.6 132 77.3
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 78.5
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 7.4e-52 207.2 115 84.3
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 7.4e-52 207.2 145 73.8
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 9.6e-52 206.8 133 74.4
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 9.6e-52 206.8 133 76.7
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 75.0
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 2.8e-51 205.3 134 73.1
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 2.8e-51 205.3 134 73.1
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 2.8e-51 205.3 134 73.1
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 2.8e-51 205.3 134 73.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 3.7e-51 204.9 134 73.1
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.8e-51 204.5 128 78.9
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.1e-50 203.4 121 80.2
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.4e-50 203.0 117 83.8
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.4e-50 203.0 117 82.9
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.4e-50 202.2 128 72.7
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.4e-50 202.2 114 83.3
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 5.3e-50 201.1 117 82.1
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 114 80.7
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.6e-49 198.7 128 71.1
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.7e-48 196.1 124 73.4
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 2.2e-48 195.7 125 75.2
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.9e-48 195.3 115 76.5
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.9e-48 195.3 121 79.3
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 5.0e-48 194.5 136 72.8
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 6.5e-48 194.1 117 76.9
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 8.4e-48 193.7 120 75.8
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.9e-47 192.6 128 73.4
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.2e-47 191.8 124 71.8
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.2e-46 189.9 120 75.0
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 9.7e-44 180.3 137 67.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 4.1e-42 174.9 128 63.3
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.5e-41 172.9 117 65.0
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.2e-40 169.1 131 62.6
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.2e-39 165.2 91 84.6
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.2e-39 165.2 113 70.8
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 7.9e-38 160.6 103 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.1e-34 150.2 103 68.9
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.2e-33 146.7 118 57.6
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 5.5e-31 137.9 75 84.0
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.6e-30 136.3 78 80.8
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.6e-28 129.0 85 76.5
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.1e-26 121.7 73 80.8
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 5.3e-26 121.3 77 72.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.5e-25 119.8 77 74.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.0e-25 119.4 73 75.3
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.7e-21 104.4 70 65.7
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 5.7e-20 101.3 56 85.7
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-19 100.1 60 78.3
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 2.3e-13 79.3 50 70.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.5e-12 76.6 60 61.7
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 4.8e-11 71.6 95 35.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 8.5e-08 60.8 42 66.7


User provided reference genes

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