Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 2.9e-57 224.9 107 100.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.0e-50 202.2 107 86.9
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 7.5e-50 200.3 107 85.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.7e-49 199.1 107 86.9
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 84.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 83.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 7.1e-48 193.7 105 83.8
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 83.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 83.2
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 82.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 82.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 82.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 83.2
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 82.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.5e-47 191.4 105 82.9
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 81.3
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 82.2
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 82.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 82.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 80.4
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 7.8e-47 190.3 106 84.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 7.8e-47 190.3 106 84.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 82.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 80.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 80.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 81.3
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 80.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 81.3
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 81.3
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 81.3
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 81.3
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 80.4
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.7e-46 189.1 106 83.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.3e-46 188.7 104 82.7
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.3e-46 188.7 107 81.3
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 81.9
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 81.9
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.0e-46 188.3 106 83.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 3.9e-46 188.0 107 80.4
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 79.4
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 5.1e-46 187.6 105 81.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 80.4
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.1e-46 187.6 103 82.5
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 79.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 79.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 8.6e-46 186.8 106 81.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 79.4
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 78.5
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 79.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.5e-45 186.0 107 78.5
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 81.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 79.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.5e-45 186.0 106 80.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.9e-45 185.7 103 81.6
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 78.5
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.5e-45 185.3 106 80.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 77.6
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 80.0
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 79.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 77.6
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 78.5
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.6e-45 184.1 104 77.9
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 5.6e-45 184.1 105 80.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 7.3e-45 183.7 104 80.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.3e-45 183.7 105 80.0
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 9.5e-45 183.3 104 80.8
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 9.5e-45 183.3 105 80.0
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 9.5e-45 183.3 104 78.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 76.6
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 77.6
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.2e-44 183.0 98 86.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.2e-44 183.0 102 82.4
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.2e-44 183.0 102 82.4
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 77.6
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-44 181.8 105 79.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 75.7
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 79.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 76.9
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 76.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 76.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 77.4
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 74.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 78.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 8.1e-44 180.3 98 84.7
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 8.1e-44 180.3 105 77.1
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 74.8
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.8e-43 179.1 104 77.9
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 75.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 73.8
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.1e-43 178.3 103 76.7
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.0
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 75.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 5.2e-43 177.6 109 75.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 8.9e-43 176.8 105 77.1
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 76.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 72.9
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 72.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 71.0
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 76.6
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 74.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.9e-42 173.3 107 72.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 9.9e-42 173.3 107 72.0
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.3e-41 172.9 98 79.6
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.0
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 71.0
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 72.9
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 76.9
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 70.1
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 6.4e-41 170.6 104 76.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.4e-41 170.6 108 74.1
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 8.4e-41 170.2 103 74.8
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 71.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 71.4
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 107 70.1
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 69.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.4e-40 169.5 110 70.9
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 73.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.4e-40 168.7 110 74.5
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 72.1
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 71.2
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 70.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 68.6
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 67.6
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 5.1e-38 161.0 105 68.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.6e-38 160.6 169 51.5
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 89 77.5
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.9e-37 159.1 87 79.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.5e-37 158.7 97 70.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 8.1e-36 153.7 100 68.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.1e-35 153.3 82 86.6
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.4e-32 142.1 78 76.9
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.4e-32 141.0 103 66.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.2e-31 139.8 104 63.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.2e-31 139.8 102 64.7
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.7e-30 136.0 80 77.5
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 6.6e-30 134.0 72 79.2
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.9e-29 132.5 95 61.1
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.6e-28 129.4 100 59.0
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.8e-28 127.9 66 81.8
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 6.9e-27 124.0 82 67.1
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.7e-25 119.4 59 98.3
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 6.4e-25 117.5 73 74.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 9.3e-24 113.6 95 48.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.0e-22 110.2 67 77.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 6.7e-22 107.5 63 79.4
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.3e-21 104.8 71 66.2
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.8e-20 102.1 63 76.2
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.8e-19 99.4 92 45.7
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 4.0e-19 98.2 69 68.1
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 5.3e-19 97.8 60 75.0
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 5.8e-18 94.4 55 76.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 7.6e-18 94.0 92 42.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.4e-16 89.7 54 75.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.4e-16 89.7 63 65.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 5.5e-16 87.8 51 80.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.5e-16 87.8 106 45.3
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 9.3e-16 87.0 55 69.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.3e-14 82.4 41 80.5
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.3e-12 76.6 65 56.9
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.8e-12 75.5 47 70.2
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 1.4e-08 63.2 94 31.9
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 8.7e-06 53.9 35 74.3


User provided reference genes

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