Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 0.0e+00 1146.3 602 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.2e-240 836.6 590 70.5
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 4.3e-235 818.1 590 70.5
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.1e-233 813.5 591 69.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.9e-230 802.7 598 69.1
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.2e-229 800.0 585 69.6
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.2e-229 800.0 587 67.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.0e-228 797.0 588 69.0
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.9e-228 795.0 591 69.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.9e-227 792.7 597 67.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.5e-227 792.3 612 67.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.0e-225 785.0 593 66.6
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.6e-224 782.3 596 67.8
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-222 776.9 587 67.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.2e-221 773.5 587 67.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.6e-221 773.1 587 66.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.1e-221 772.7 595 65.7
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 4.6e-221 771.5 615 66.3
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.8e-220 769.6 587 66.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 8.7e-220 767.3 594 65.8
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 7.4e-219 764.2 595 66.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.1e-217 760.4 594 65.8
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.9e-215 751.5 575 66.4
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.6e-213 745.0 601 65.4
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.8e-212 743.0 589 64.0
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.3e-211 738.4 589 64.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 7.4e-211 737.6 599 63.3
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.4e-211 737.6 601 64.4
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 3.7e-210 735.3 601 64.7
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.1e-209 731.9 599 65.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 4.5e-208 728.4 587 63.7
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.5e-208 728.4 528 69.7
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.8e-208 728.0 589 63.8
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.6e-208 727.6 599 65.4
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.8e-207 725.3 520 70.0
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.2e-206 722.2 606 62.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 5.5e-206 721.5 608 64.0
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 7.2e-206 721.1 587 63.4
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.2e-205 720.3 590 63.1
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.6e-205 719.9 601 64.7
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.7e-205 719.2 590 62.5
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.0e-204 717.2 584 65.9
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.3e-204 716.8 592 62.3
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.3e-204 716.8 588 63.1
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.9e-204 715.3 587 61.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 7.4e-203 711.1 592 62.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.4e-203 711.1 516 68.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 9.7e-203 710.7 592 61.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.6e-202 709.9 789 51.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 6.3e-202 708.0 596 61.6
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-200 703.7 593 61.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.6e-200 702.6 590 61.2
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 4.5e-200 701.8 581 61.3
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.0e-199 700.7 589 60.6
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.0e-199 700.7 600 61.2
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.2e-199 699.5 604 60.3
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.4e-198 696.8 604 60.6
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.6e-197 693.3 609 59.4
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.7e-197 692.6 598 58.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.6e-197 691.8 605 57.5
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.6e-197 691.8 601 59.4
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 6.1e-197 691.4 648 58.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 8.8e-196 687.6 600 59.8
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.1e-195 687.2 605 58.5
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.0e-195 686.4 613 58.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.5e-195 686.0 601 61.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.5e-195 686.0 599 58.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.5e-195 686.0 600 59.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.5e-195 686.0 593 62.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.3e-195 685.3 604 57.9
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 7.4e-195 684.5 603 56.6
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-194 683.7 599 58.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.8e-194 682.6 608 57.1
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 6.3e-194 681.4 615 56.7
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-193 680.6 604 59.1
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.4e-193 680.2 605 56.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.4e-193 680.2 590 61.4
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-191 673.3 574 59.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.2e-190 668.7 601 57.2
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.7e-189 665.2 573 59.5
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 6.1e-189 664.8 572 59.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.1e-187 660.6 557 64.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 9.7e-187 657.5 522 62.3
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-186 656.8 600 58.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 8.5e-183 644.4 583 58.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.2e-182 641.3 597 58.1
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 5.2e-172 608.6 488 63.3
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 8.8e-172 607.8 549 57.9
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 8.3e-170 601.3 593 53.1
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.0e-167 594.3 528 57.2
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.2e-166 589.3 624 52.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.2e-165 587.4 618 51.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.4e-164 583.9 597 53.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 3.5e-160 569.3 469 62.9
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-153 545.8 356 75.3
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 5.0e-151 538.9 558 50.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.3e-135 487.6 620 46.6
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.8e-124 450.7 370 61.4
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.8e-122 443.0 447 52.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 6.6e-119 432.2 502 45.6
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.8e-117 426.0 514 44.9
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.8e-116 424.1 304 69.1
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.2e-112 411.4 514 44.4
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.4e-105 387.1 335 59.4
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.6e-104 382.9 531 40.7
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.5e-89 332.8 409 49.6
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.5e-86 324.7 216 76.4
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.0e-83 314.3 276 59.1
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.7e-82 311.2 216 74.5
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.8e-71 274.6 275 52.4
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.7e-70 269.6 586 31.7
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.6e-67 261.5 181 73.5
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.5e-65 253.1 364 37.4
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.1e-64 251.1 348 39.9
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.2e-49 199.5 161 63.4
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 6.3e-45 186.4 113 76.1
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.8e-42 177.2 123 65.9
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.7e-37 161.8 122 69.7
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.8e-30 136.0 107 63.6
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.5e-27 127.5 193 38.3
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.0e-26 125.9 95 56.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.6e-26 123.2 74 77.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 4.3e-25 120.6 573 22.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.5e-25 119.4 143 42.7
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-24 119.0 128 50.0
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.4e-22 110.5 98 54.1
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 9.9e-22 109.4 371 26.4
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.2e-21 108.2 113 47.8
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 6.0e-19 100.1 97 48.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-15 88.2 80 52.5
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.0e-15 87.4 123 43.9
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.2e-14 85.9 83 49.4
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.4e-14 84.3 80 51.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-12 79.3 60 60.0
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.4e-12 79.0 109 41.3
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 3.5e-11 74.3 58 67.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 6.0e-11 73.6 138 37.0
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-10 72.4 86 41.9
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.1e-09 69.3 243 24.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.6e-08 65.5 172 29.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 3.1e-07 61.2 62 51.6
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 4.0e-07 60.8 36 75.0


User provided reference genes

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