Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.6e-151 538.5 370 100.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 8.0e-92 342.4 244 70.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 4.0e-91 340.1 245 71.8
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 6.3e-89 332.8 359 67.7
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-88 330.9 360 74.2
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 3.1e-88 330.5 256 67.2
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.0e-71 274.6 246 61.0
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.7e-63 247.7 258 53.9
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 2.3e-59 234.6 253 50.6
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.0e-58 231.5 257 51.0
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.0e-58 231.5 248 54.0
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 4.4e-58 230.3 246 55.3
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.8e-58 229.9 251 51.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 7.5e-58 229.6 252 52.0
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.7e-57 228.4 254 53.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 4.9e-57 226.9 256 52.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.9e-56 224.9 255 49.8
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.9e-56 224.9 253 51.8
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 2.1e-55 221.5 263 50.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-55 221.1 254 51.2
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 2.7e-55 221.1 216 53.2
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 3.5e-55 220.7 251 52.6
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 4.6e-55 220.3 239 54.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 4.6e-55 220.3 255 50.2
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 6.0e-55 219.9 256 47.3
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 6.0e-55 219.9 248 52.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 7.8e-55 219.5 251 52.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.3e-54 218.0 230 51.3
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.3e-54 218.0 167 65.3
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.1e-54 216.9 232 51.3
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 5.1e-54 216.9 242 49.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 8.6e-54 216.1 254 51.6
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 8.6e-54 216.1 257 47.5
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.1e-53 215.7 256 50.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.9e-53 214.9 240 48.3
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.5e-53 214.5 173 66.5
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.6e-52 211.8 249 51.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.8e-52 211.1 228 52.2
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 3.6e-52 210.7 241 48.5
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 8.1e-52 209.5 249 50.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 8.1e-52 209.5 233 49.8
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-51 208.8 197 54.3
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-51 208.8 197 54.3
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-51 208.4 167 65.9
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 5.2e-51 206.8 195 54.4
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 5.2e-51 206.8 252 50.0
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 6.8e-51 206.5 263 46.4
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 6.8e-51 206.5 209 53.1
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 2.0e-50 204.9 234 49.6
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 4.4e-50 203.8 260 46.2
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 9.9e-50 202.6 245 47.8
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 9.9e-50 202.6 215 50.7
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.2e-49 201.4 208 51.9
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.2e-49 201.4 264 47.0
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-49 201.1 158 65.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-49 201.1 158 65.8
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.9e-49 201.1 190 55.8
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.8e-49 200.7 255 47.8
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 3.8e-49 200.7 263 45.6
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.9e-49 200.3 256 46.1
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 6.4e-49 199.9 260 45.8
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.4e-49 199.5 193 53.4
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 8.4e-49 199.5 166 62.7
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 9.2e-48 196.1 239 48.5
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.5e-47 194.1 212 50.9
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 4.6e-47 193.7 231 48.5
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 7.8e-47 193.0 166 60.8
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.0e-46 192.6 166 60.8
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.0e-46 192.6 166 60.8
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 3.9e-46 190.7 185 53.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.1e-45 189.1 166 59.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.3e-45 187.6 193 54.9
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.6e-44 185.3 259 43.2
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 2.1e-44 184.9 211 49.3
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.7e-44 183.7 198 55.1
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.8e-43 181.8 170 55.9
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-43 181.8 208 52.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.2e-43 180.3 217 47.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-42 179.1 207 51.7
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 9.9e-42 176.0 191 50.8
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 6.4e-41 173.3 201 47.3
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-39 167.5 137 63.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 6.0e-39 166.8 219 47.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 8.7e-38 162.9 224 49.1
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.9e-37 161.8 140 58.6
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.9e-37 161.8 139 58.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.6e-36 158.7 120 69.2
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.1e-35 156.0 127 63.8
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.1e-35 154.5 177 47.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 4.0e-35 154.1 189 47.6
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.2e-34 152.5 128 62.5
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-34 152.1 145 53.8
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.5e-34 150.6 153 51.6
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 5.8e-34 150.2 142 53.5
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 5.8e-34 150.2 142 53.5
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-33 149.1 161 48.4
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.7e-33 148.7 200 45.5
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.9e-33 147.9 198 44.9
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.1e-32 146.0 146 52.7
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.4e-32 145.6 107 71.0
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.4e-32 144.8 167 50.9
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 7.1e-32 143.3 151 47.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 2.7e-31 141.4 134 55.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 3.5e-31 141.0 178 45.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.3e-30 139.0 126 56.3
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 5.1e-30 137.1 114 61.4
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 4.8e-28 130.6 130 53.8
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 6.2e-28 130.2 130 53.8
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 4.0e-27 127.5 161 46.0
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.5e-26 125.6 162 44.4
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.6e-26 124.8 126 50.0
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.4e-26 124.4 166 43.4
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 4.5e-26 124.0 180 42.2
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 8.4e-25 119.8 162 39.5
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.1e-23 115.2 126 46.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.3e-22 112.5 132 45.5
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 6.7e-22 110.2 163 42.3
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.4e-19 101.7 125 46.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 5.8e-18 97.1 110 51.8
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.2e-15 89.4 123 40.7
CANSAT54G1800 Cannabis sativa HOM05D006008 ORTHO05D007334 7.4e-13 80.1 38 100.0
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 2.9e-09 68.2 62 54.8
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.9e-08 65.5 72 50.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 6.1e-07 60.5 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.911 Anthoceros agrestis HOM05D007128 ORTHO05D002107 7.9e-07 60.1 200 26.0
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.0e-06 58.2 107 30.8


User provided reference genes

Program Settings