Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.5e-107 392.1 195 100.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.1e-70 270.4 207 68.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 4.5e-69 265.0 197 70.1
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 4.5e-69 265.0 156 82.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.0e-68 263.8 195 71.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.7e-68 263.1 188 70.2
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.8e-68 261.9 157 80.3
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.8e-68 261.9 192 70.8
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 6.6e-68 261.2 162 76.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 8.6e-68 260.8 155 79.4
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-67 260.4 178 73.0
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-67 260.4 172 76.2
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.5e-67 259.2 210 65.7
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 7.3e-67 257.7 171 76.0
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.2e-66 256.9 156 78.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.6e-66 256.5 164 76.8
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.1e-66 254.6 162 75.9
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 6.1e-66 254.6 153 78.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 8.0e-66 254.2 158 79.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.4e-65 253.4 169 71.6
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.8e-65 253.1 161 75.8
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.8e-65 251.1 185 68.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.0e-64 249.6 174 71.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.0e-64 249.6 168 72.6
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.4e-64 248.8 175 70.3
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 7.5e-64 247.7 198 68.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 7.5e-64 247.7 151 77.5
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.2e-63 246.1 206 62.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 3.7e-63 245.4 200 66.5
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.1e-62 243.8 180 68.3
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.0e-61 239.6 152 75.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.7e-61 239.2 152 74.3
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 2.7e-61 239.2 152 74.3
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.5e-61 238.8 168 72.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.5e-61 238.8 152 76.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 5.9e-61 238.0 152 73.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 5.9e-61 238.0 152 73.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 5.9e-61 238.0 152 73.7
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 5.9e-61 238.0 161 70.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.9e-61 238.0 175 68.0
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 5.9e-61 238.0 189 67.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 7.8e-61 237.7 156 71.8
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.0e-60 237.3 152 73.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.3e-60 236.9 152 73.0
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 3.0e-60 235.7 188 66.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.9e-60 235.3 171 69.6
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 5.0e-60 235.0 160 69.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.9e-59 233.0 163 70.6
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.3e-59 232.3 170 70.6
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.3e-59 231.9 174 67.2
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.6e-59 231.5 158 73.4
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.2e-58 230.3 172 67.4
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.6e-58 229.9 168 67.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.6e-58 228.8 192 62.5
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.4e-57 226.9 158 72.8
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.0e-57 225.3 199 59.8
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 6.8e-57 224.6 158 70.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 6.8e-57 224.6 178 65.2
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.6e-56 222.6 156 70.5
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 5.8e-56 221.5 180 63.3
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.3e-55 220.3 156 68.6
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.3e-55 220.3 158 69.0
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.1e-54 217.2 159 69.2
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.4e-54 216.9 172 64.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 9.2e-54 214.2 154 70.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.0e-53 213.0 159 67.9
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.0e-53 213.0 158 62.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.7e-53 212.6 153 68.0
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.5e-53 212.2 155 67.7
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.5e-53 212.2 158 68.4
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.0e-52 210.7 155 65.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.7e-52 209.9 160 65.0
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.3e-52 209.5 161 67.7
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.9e-51 206.5 193 60.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 2.5e-51 206.1 171 60.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 3.3e-51 205.7 207 55.6
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.3e-51 205.3 153 65.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.6e-51 204.9 175 61.1
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 5.6e-51 204.9 234 50.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.6e-50 202.2 162 63.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 4.7e-50 201.8 162 63.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-49 200.7 114 86.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.1e-49 199.1 119 79.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 5.2e-49 198.4 158 66.5
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.6e-48 196.1 119 79.8
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.6e-48 196.1 156 60.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.4e-48 195.7 154 63.6
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.8e-48 194.9 119 78.2
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 9.9e-48 194.1 121 79.3
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 9.9e-48 194.1 157 61.8
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.7e-47 193.4 114 84.2
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.7e-47 193.4 156 63.5
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.9e-47 192.6 112 83.0
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.4e-47 191.4 152 61.2
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 8.3e-47 191.0 122 78.7
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 8.3e-47 191.0 113 81.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.4e-46 189.5 154 62.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 4.1e-46 188.7 169 59.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 5.4e-46 188.3 119 74.8
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 7.1e-46 188.0 112 82.1
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.2e-45 187.2 180 57.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.6e-45 186.8 114 81.6
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.7e-45 186.0 114 80.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 7.8e-45 184.5 114 79.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 7.8e-45 184.5 116 78.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.0e-44 184.1 154 59.1
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.3e-44 183.0 115 76.5
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.3e-44 183.0 112 80.4
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.3e-44 183.0 110 80.9
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.6e-44 181.4 152 57.2
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.5e-43 180.3 121 69.4
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.5e-43 180.3 161 55.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.5e-43 180.3 157 61.1
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.3e-43 179.1 131 67.9
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 4.3e-43 178.7 162 55.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.3e-43 178.7 170 54.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-42 177.2 129 65.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.6e-42 176.8 155 59.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 8.1e-42 174.5 112 74.1
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 6.8e-41 171.4 158 59.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.8e-41 171.4 154 57.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 8.9e-41 171.0 114 73.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.2e-40 170.6 155 55.5
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 9.2e-38 161.0 131 58.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.0e-36 157.5 96 80.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.3e-35 152.5 142 58.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 7.3e-35 151.4 176 52.8
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.8e-34 149.4 156 55.8
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.6e-32 142.9 112 61.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.4e-32 142.1 77 84.4
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 4.9e-31 138.7 124 56.5
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.6e-29 133.7 159 49.1
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.5e-27 127.1 153 48.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.9e-27 126.7 121 58.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 6.2e-26 121.7 70 84.3
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.2e-24 117.5 77 64.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.3e-23 114.0 70 80.0
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.9e-23 112.8 79 74.7
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.8e-23 112.5 69 76.8
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.4e-23 111.7 71 77.5
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.6e-21 107.1 154 42.2
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-21 106.7 122 53.3
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.3e-20 103.2 121 52.1
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.9e-19 100.1 81 60.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 7.4e-19 98.2 151 41.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 9.6e-19 97.8 62 77.4
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.2e-15 86.7 55 74.5
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.3e-12 77.4 44 75.0
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 6.7e-12 75.1 85 50.6
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.5e-11 73.9 73 49.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.3e-11 72.4 47 68.1
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 7.4e-11 71.6 57 56.1
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 9.6e-11 71.2 65 53.8
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 1.6e-10 70.5 45 62.2
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 1.6e-10 70.5 82 47.6
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-10 70.1 68 52.9
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 4.8e-10 68.9 45 66.7
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.4e-09 67.4 78 48.7
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.1e-09 66.2 41 68.3
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 5.3e-09 65.5 90 41.1
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.5e-08 63.9 54 59.3
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.8e-08 62.0 41 65.9
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.6e-08 61.6 54 57.4
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 1.0e-07 61.2 41 61.0
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.0e-07 61.2 40 67.5
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 2.2e-07 60.1 41 61.0
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 6.5e-07 58.5 38 65.8
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 2.5e-06 56.6 38 60.5


User provided reference genes

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