Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 1.0e-111 406.8 205 100.0
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 6.9e-92 340.9 172 98.8
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.7e-37 160.2 158 52.5
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 7.2e-33 144.8 162 46.3
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 2.7e-32 142.9 163 44.2
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 8.8e-31 137.9 161 44.7
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 4.4e-30 135.6 151 45.0
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 8.2e-29 131.3 158 49.4
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 1.1e-28 131.0 163 42.9
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.8e-28 130.2 145 49.0
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 7.0e-28 128.3 160 40.6
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 9.1e-28 127.9 159 39.6
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 9.1e-28 127.9 165 41.8
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 9.1e-28 127.9 145 46.2
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.6e-27 127.1 152 43.4
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.7e-27 126.3 151 43.7
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 3.5e-27 125.9 149 49.7
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 4.5e-27 125.6 154 40.3
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 7.7e-27 124.8 149 47.0
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 1.0e-26 124.4 154 40.9
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.0e-26 124.4 154 40.9
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 1.3e-26 124.0 149 43.6
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 6.5e-26 121.7 148 41.2
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.5e-25 120.6 162 40.7
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.5e-25 120.6 150 40.7
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 1.5e-25 120.6 160 39.4
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.5e-25 120.6 160 39.4
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 4.2e-25 119.0 149 47.0
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 4.2e-25 119.0 145 41.4
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 5.5e-25 118.6 151 39.1
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 2.6e-22 109.8 163 39.3
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 3.4e-22 109.4 134 42.5
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 7.5e-22 108.2 154 37.0
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 7.5e-22 108.2 154 36.4
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 2.8e-21 106.3 158 39.2
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 6.3e-21 105.1 158 36.7
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.3e-21 104.8 154 36.4
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 3.1e-20 102.8 157 35.7
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.6e-19 100.5 152 37.5
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 8.6e-18 94.7 160 33.8
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 1.1e-17 94.4 149 38.3
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 1.9e-17 93.6 148 37.2
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 2.5e-17 93.2 128 40.6
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 4.2e-17 92.4 163 34.4
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 9.5e-17 91.3 145 39.3
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-16 90.9 139 36.0
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 1.6e-16 90.5 127 40.2
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 1.6e-16 90.5 148 35.1
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.1e-16 90.1 139 34.5
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 2.1e-16 90.1 147 34.0
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 3.6e-16 89.4 148 33.8
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.0e-15 87.8 149 30.9
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-14 84.3 147 36.7
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.7e-14 82.0 99 38.4
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 7.5e-14 81.6 151 35.1
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.8e-14 81.3 135 36.3
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 1.1e-12 77.8 151 30.5
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 2.4e-12 76.6 143 32.2
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 3.1e-12 76.3 140 35.0
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 7.0e-12 75.1 153 30.7
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 1.6e-11 73.9 146 28.8
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 2.0e-11 73.6 80 42.5
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 1.0e-10 71.2 102 41.2
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 2.3e-10 70.1 147 27.2
Manes.02G182200 Manihot esculenta HOM05D004894 ORTHO05D009560 5.0e-10 68.9 122 33.6
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.6e-10 68.6 97 36.1
BcaC05g24789 Brassica carinata HOM05D013394 ORTHO05D009712 8.6e-10 68.2 147 26.5
BolC5t29492H Brassica oleracea HOM05D013394 ORTHO05D009712 8.6e-10 68.2 147 26.5
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 8.6e-10 68.2 150 29.3
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.9e-09 67.0 93 37.6
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 4.3e-09 65.9 165 29.7
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 5.6e-09 65.5 148 25.7
C05p07380 Brassica napus HOM05D009911 ORTHO05D009712 7.3e-09 65.1 148 26.4
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 7.3e-09 65.1 148 27.0
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 9.5e-09 64.7 158 27.8
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 9.5e-09 64.7 93 37.6
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 1.2e-08 64.3 136 26.5
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 2.1e-08 63.5 111 31.5
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 2.8e-08 63.2 135 26.7
QL04p005661 Quercus lobata HOM05D003146 ORTHO05D001819 3.6e-08 62.8 100 32.0
QL04p032132 Quercus lobata HOM05D003146 ORTHO05D001819 6.1e-08 62.0 150 31.3
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 1.0e-07 61.2 96 30.2
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-07 60.8 86 32.6
SGA_v2.0_scaffold48G17932 Striga asiatica HOM05D008339 ORTHO05D009712 1.4e-07 60.8 146 25.3
QL04p033186 Quercus lobata HOM05D003146 ORTHO05D001819 1.8e-07 60.5 150 30.0
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 2.3e-07 60.1 144 27.8
Thhalv10009653m.g Eutrema salsugineum HOM05D009911 ORTHO05D009712 3.0e-07 59.7 148 26.4
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 4.0e-07 59.3 114 29.8
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 5.2e-07 58.9 155 23.9
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 6.8e-07 58.5 99 33.3
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 6.8e-07 58.5 99 33.3
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 6.8e-07 58.5 130 34.6
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 8.9e-07 58.2 111 30.6
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 1.2e-06 57.8 140 23.6
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.5e-06 57.4 143 28.0
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 1.5e-06 57.4 91 29.7
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.5e-06 57.4 124 29.0
BolC5t29496H Brassica oleracea HOM05D009911 ORTHO05D009712 2.0e-06 57.0 151 25.8
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 2.0e-06 57.0 115 27.8
C05p07390 Brassica napus HOM05D009911 ORTHO05D009712 2.6e-06 56.6 151 25.8
TPR.G22073 Trifolium pratense HOM05D007995 ORTHO05D001819 2.6e-06 56.6 112 27.7
Peaxi162Scf01623g00014 Petunia axillaris HOM05D009933 ORTHO05D012084 3.4e-06 56.2 135 23.7
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 3.4e-06 56.2 93 30.1
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 3.4e-06 56.2 154 24.7
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 4.4e-06 55.8 124 28.2
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 5.7e-06 55.5 120 27.5
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.7e-06 55.5 118 33.1
COL.COLO4_24558 Corchorus olitorius HOM05D015467 ORTHO05D001819 7.5e-06 55.1 138 26.1
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 7.5e-06 55.1 84 31.0
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 7.5e-06 55.1 101 28.7
QL04p005657 Quercus lobata HOM05D003146 ORTHO05D001819 9.8e-06 54.7 100 30.0


User provided reference genes

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