Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.0e-50 203.0 96 100.0
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 5.9e-46 187.2 94 88.3
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.3e-45 185.3 96 84.4
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.0e-42 176.4 98 82.7
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.4e-42 176.0 98 81.6
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.8e-42 175.6 98 82.7
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 6.8e-42 173.7 95 81.1
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 6.8e-42 173.7 98 80.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 1.2e-41 172.9 95 81.1
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 1.5e-41 172.6 98 80.6
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 2.6e-41 171.8 96 80.2
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 2.6e-41 171.8 97 80.4
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-41 171.8 98 79.6
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.4e-41 171.4 98 79.6
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 9.8e-41 169.9 98 79.6
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 9.8e-41 169.9 98 79.6
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.3e-40 169.5 98 78.6
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 2.8e-40 168.3 96 78.1
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.1e-39 166.4 98 77.6
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.4e-39 166.0 98 78.6
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 3.2e-39 164.9 83 89.2
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.1e-39 164.5 98 74.5
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.0e-38 162.2 83 86.7
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.0e-38 162.2 98 73.5
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.0e-38 162.2 98 73.5
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 3.5e-38 161.4 98 73.5
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 3.5e-38 161.4 96 77.1
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.3e-37 159.5 98 72.4
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.7e-37 159.1 93 78.5
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 2.9e-37 158.3 93 77.4
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 6.6e-37 157.1 97 73.2
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.5e-36 156.0 93 76.3
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-36 155.6 96 74.0
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.9e-36 155.6 96 74.0
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.9e-36 155.6 83 84.3
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.3e-36 154.5 96 72.9
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 4.3e-36 154.5 96 75.0
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 7.3e-36 153.7 96 71.9
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 7.3e-36 153.7 97 71.1
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 9.5e-36 153.3 98 71.4
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.6e-35 152.5 96 70.8
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 2.1e-35 152.1 96 71.9
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 3.6e-35 151.4 96 72.9
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 4.7e-35 151.0 96 70.8
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 6.1e-35 150.6 96 69.8
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 8.0e-35 150.2 96 69.8
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 3.1e-34 148.3 96 72.9
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 8.9e-34 146.7 100 67.0
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.2e-33 146.4 95 73.7
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 9.8e-33 143.3 96 65.6
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 2.2e-32 142.1 73 86.3
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 2.2e-32 142.1 101 68.3
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.9e-32 141.7 96 65.6
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 3.7e-32 141.4 96 66.7
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.1e-31 139.8 95 66.3
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.4e-31 139.4 85 74.1
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.9e-31 139.0 96 65.6
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 2.4e-31 138.7 100 64.0
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.4e-31 138.7 85 74.1
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 3.2e-31 138.3 96 62.5
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 5.4e-31 137.5 95 66.3
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 9.2e-31 136.7 101 65.3
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 9.2e-31 136.7 96 65.6
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 9.2e-31 136.7 96 68.8
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 9.2e-31 136.7 85 72.9
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.2e-30 136.3 96 64.6
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.2e-30 136.3 96 63.5
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.6e-30 136.0 132 53.0
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.0e-30 135.6 85 72.9
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.0e-30 135.6 85 71.8
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.7e-30 135.2 95 64.2
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 2.7e-30 135.2 82 75.6
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 6.0e-30 134.0 99 64.6
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 1.3e-29 132.9 97 64.9
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 2.3e-29 132.1 97 61.9
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 5.0e-29 131.0 84 70.2
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 2.5e-28 128.6 96 61.5
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 3.3e-28 128.3 97 61.9
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 5.6e-28 127.5 97 58.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 7.3e-28 127.1 83 67.5
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 7.3e-28 127.1 85 68.2
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 9.5e-28 126.7 86 65.1
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.2e-27 126.3 96 61.5
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 1.2e-27 126.3 97 64.9
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 4.7e-27 124.4 96 59.4
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 2.3e-26 122.1 96 60.4
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 3.1e-26 121.7 83 63.9
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.2e-25 119.8 83 62.7
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.5e-25 119.4 98 60.2
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.0e-25 119.0 83 65.1
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 2.6e-25 118.6 84 64.3
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 2.6e-25 118.6 83 62.7
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.5e-25 117.1 92 57.6
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.1e-23 113.2 83 61.4
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.4e-23 112.8 102 55.9
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.9e-23 112.5 93 57.0
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 3.2e-23 111.7 100 55.0
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 4.1e-23 111.3 90 65.6
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.1e-23 110.5 87 57.5
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 7.1e-23 110.5 72 70.8
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.2e-22 109.8 69 68.1
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 1.6e-22 109.4 103 55.3
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.1e-22 109.0 99 53.5
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.7e-22 108.6 83 59.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 3.5e-22 108.2 101 55.4
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.3e-21 105.5 102 52.0
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 5.1e-21 104.4 105 51.4
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 5.1e-21 104.4 102 52.0
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 6.6e-21 104.0 86 55.8
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 8.6e-21 103.6 103 50.5
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 8.6e-21 103.6 108 49.1
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 1.1e-20 103.2 104 48.1
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.9e-20 102.4 103 50.5
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 3.3e-20 101.7 104 50.0
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 9.5e-20 100.1 97 52.6
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.2e-19 99.8 110 48.2
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 2.1e-19 99.0 112 47.3
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 5.2e-18 94.4 80 57.5
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 5.2e-18 94.4 73 57.5
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 5.8e-17 90.9 58 72.4
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 6.4e-16 87.4 60 70.0
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.9e-15 85.9 78 53.8
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 6.0e-14 80.9 89 46.1
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 6.0e-14 80.9 89 46.1
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 3.0e-13 78.6 53 62.3
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 1.9e-12 75.9 53 60.4
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.3e-12 74.7 70 52.9
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 1.2e-11 73.2 68 52.9
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 2.1e-11 72.4 76 44.7
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 2.1e-11 72.4 76 44.7
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 8.1e-11 70.5 49 63.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 1.2e-09 66.6 62 50.0
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 9.9e-09 63.5 53 49.1
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 2.9e-08 62.0 48 52.1
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 1.4e-07 59.7 38 65.8
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 7.1e-07 57.4 41 58.5


User provided reference genes

Program Settings