Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 0.0e+00 2354.3 1258 100.0
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 0.0e+00 1522.7 1441 63.2
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 1.3e-71 276.2 682 37.0
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 3.0e-65 255.0 1248 28.2
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.3e-63 249.6 1334 27.9
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 8.5e-60 236.9 689 35.1
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 4.9e-55 221.1 761 32.7
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 4.1e-54 218.0 1249 27.9
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 7.0e-54 217.2 755 32.1
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 1.0e-52 213.4 741 31.8
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.0e-49 203.4 1321 27.6
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 5.9e-45 187.6 540 35.0
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 5.9e-45 187.6 520 37.1
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 1.7e-44 186.0 519 36.8
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.1e-43 183.3 732 31.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 3.3e-43 181.8 1354 27.2
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 3.6e-42 178.3 1433 26.3
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.6e-42 178.3 784 30.2
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 3.6e-42 178.3 538 36.1
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 6.2e-42 177.6 1041 27.7
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 8.0e-42 177.2 674 31.8
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 3.1e-41 175.3 541 34.0
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.5e-40 172.9 820 30.0
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.1e-38 166.8 1389 25.5
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.4e-38 165.6 681 32.9
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 9.2e-38 163.7 1371 26.0
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 5.0e-36 157.9 487 33.5
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 8.6e-36 157.1 460 35.2
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.5e-35 155.6 540 32.0
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.2e-34 153.3 509 33.0
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.2e-34 153.3 468 36.1
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 1.6e-34 152.9 232 47.0
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 2.8e-34 152.1 513 33.7
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 3.6e-34 151.8 1340 25.4
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 4.7e-34 151.4 529 33.3
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 2.3e-33 149.1 1297 25.8
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 5.1e-28 131.3 1365 24.6
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 6.6e-28 131.0 514 30.4
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.1e-27 130.2 411 32.4
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.9e-27 129.4 1420 24.4
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 3.3e-27 128.6 478 31.6
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 3.6e-26 125.2 523 31.5
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.4e-25 123.2 619 29.2
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.8e-25 122.9 486 31.5
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 3.1e-25 122.1 1383 24.0
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 1.5e-24 119.8 419 33.4
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.5e-24 119.8 528 30.5
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 2.0e-24 119.4 711 27.8
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 2.9e-23 115.5 517 29.8
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 3.2e-22 112.1 219 41.6
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 9.2e-22 110.5 237 38.4
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.6e-21 109.8 410 34.1
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 2.1e-21 109.4 1302 23.9
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 3.5e-21 108.6 463 31.1
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 1.0e-20 107.1 537 29.2
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.2e-18 100.1 486 29.4
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 2.1e-18 99.4 480 29.0
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 4.0e-17 95.1 391 29.2
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 3.4e-16 92.0 583 28.8
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 5.8e-16 91.3 480 29.0
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 9.9e-16 90.5 371 31.5
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 2.2e-15 89.4 380 30.8
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.1e-14 87.0 217 35.5
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 1.1e-14 87.0 229 34.1
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 3.2e-14 85.5 279 34.4
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 4.2e-14 85.1 489 28.2
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 4.2e-14 85.1 127 42.5
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 5.4e-14 84.7 490 26.9
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 9.3e-14 84.0 200 37.0
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 2.7e-13 82.4 404 30.0
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 4.6e-13 81.6 140 41.4
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 1.0e-12 80.5 402 29.9
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 1.0e-12 80.5 402 29.9
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 5.1e-12 78.2 515 25.4
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.5e-11 76.6 807 23.5
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.9e-11 76.3 504 27.6
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 4.3e-11 75.1 381 28.1
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 7.3e-11 74.3 1371 22.8
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 7.3e-11 74.3 431 28.8
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 70.1 183 35.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 1.8e-09 69.7 233 33.0
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 3.1e-09 68.9 240 31.2
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 3.1e-09 68.9 545 26.6
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.9e-09 67.8 77 53.2
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 9.0e-09 67.4 601 23.6
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.5e-08 66.6 528 25.4
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.5e-08 66.6 188 35.1
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 5.8e-08 64.7 506 24.7
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.3e-07 63.5 177 33.3
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 2.2e-07 62.8 113 41.6
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 2.9e-07 62.4 367 26.2
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.9e-07 62.4 201 30.3
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 6.4e-07 61.2 252 29.4
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 3.2e-06 58.9 130 39.2


User provided reference genes

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