Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 5.2e-60 234.2 117 100.0
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.7e-40 168.7 83 92.8
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.7e-40 168.7 83 91.6
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 3.5e-40 168.3 83 89.2
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 4.5e-40 167.9 83 92.8
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 5.9e-40 167.5 82 91.5
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 2.9e-39 165.2 81 92.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 5.0e-39 164.5 81 91.4
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 5.0e-39 164.5 83 90.4
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.6e-39 164.1 82 89.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 4.2e-38 161.4 81 91.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-37 159.8 82 86.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 6.1e-37 157.5 80 87.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 8.0e-37 157.1 83 86.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.2e-36 154.5 104 73.1
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.6e-35 152.1 104 72.1
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.5e-32 141.7 81 80.2
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.0e-31 140.2 83 78.3
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.1e-30 136.7 83 80.7
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 4.3e-30 134.8 85 75.3
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 1.6e-29 132.9 91 72.5
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.8e-29 132.1 85 75.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 2.8e-29 132.1 85 75.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 3.6e-29 131.7 80 68.8
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 4.7e-29 131.3 85 74.1
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 6.1e-29 131.0 82 74.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.8e-28 129.4 82 74.4
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.8e-28 129.4 83 72.3
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.0e-27 125.9 84 69.0
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.4e-27 125.2 82 72.0
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 9.8e-27 123.6 83 69.9
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 9.8e-27 123.6 83 69.9
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.3e-26 123.2 83 67.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.3e-26 123.2 83 67.5
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.2e-26 122.5 83 71.1
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.2e-26 122.5 83 67.5
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-26 122.1 83 69.9
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 3.7e-26 121.7 80 72.5
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 3.7e-26 121.7 79 70.9
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.4e-26 120.9 61 90.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.4e-25 119.8 63 84.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 4.1e-25 118.2 84 69.0
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 4.1e-25 118.2 84 69.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 4.1e-25 118.2 84 69.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 7.0e-25 117.5 84 69.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.6e-24 116.3 83 67.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-24 116.3 83 67.5
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-24 116.3 83 67.5
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-24 116.3 83 67.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.7e-24 115.5 87 65.5
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.3e-23 112.5 83 65.1
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 6.2e-21 104.4 81 63.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.2e-21 104.4 83 62.7
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 8.0e-21 104.0 82 61.0
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.4e-20 103.2 82 59.8
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.8e-20 102.8 70 70.0
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.8e-20 102.8 81 51.9
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.3e-20 102.4 83 57.8
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 4.4e-19 98.2 83 50.6
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 9.8e-19 97.1 80 56.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 9.8e-19 97.1 83 56.6
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.9e-18 95.5 85 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 4.9e-18 94.7 82 52.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 4.9e-18 94.7 45 88.9
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 6.4e-18 94.4 82 54.9
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 8.3e-18 94.0 83 56.6
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.4e-17 93.2 64 57.8
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 6.0e-16 87.8 41 90.2
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.3e-15 85.9 83 49.4
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.3e-15 85.9 77 53.2
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.1e-15 84.7 65 61.5
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 8.6e-15 84.0 83 49.4
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 8.6e-15 84.0 83 49.4
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 8.6e-15 84.0 83 49.4
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 8.6e-15 84.0 83 49.4
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 8.6e-15 84.0 83 50.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-14 83.6 83 49.4
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-14 83.6 83 49.4
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.5e-14 82.4 83 49.4
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 4.3e-14 81.6 84 50.0
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 5.6e-14 81.3 83 48.2
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.8e-13 79.0 83 48.2
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.8e-13 79.0 83 48.2
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.8e-13 79.0 44 81.8
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.8e-13 79.0 81 48.1
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.7e-13 78.2 83 48.2
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.2e-13 77.8 82 48.8
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 6.2e-13 77.8 91 42.9
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 8.1e-13 77.4 83 47.0
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 8.1e-13 77.4 83 47.0
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 8.1e-13 77.4 83 47.0
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.4e-12 76.6 38 89.5
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.4e-12 76.6 83 47.0
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.8e-12 76.3 83 45.8
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.8e-12 76.3 83 47.0
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.1e-12 75.5 83 47.0
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 4.0e-12 75.1 83 45.8
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.2e-12 74.7 83 45.8
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 8.9e-12 73.9 83 45.8
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 8.9e-12 73.9 83 43.4
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.2e-11 73.6 81 46.9
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.6e-11 72.4 83 45.8
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.6e-11 72.4 83 45.8
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 2.6e-11 72.4 83 45.8
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.6e-11 72.4 62 59.7
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 2.6e-11 72.4 83 45.8
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.8e-11 71.2 83 43.4
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 5.8e-11 71.2 44 75.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.5e-11 70.9 46 69.6
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 7.5e-11 70.9 83 43.4
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.7e-10 69.7 83 44.6
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.7e-10 69.7 83 43.4
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.9e-10 68.9 81 43.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 3.7e-10 68.6 81 44.4
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 8.3e-10 67.4 83 42.2
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.4e-09 66.6 35 80.0
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.9e-09 66.2 83 41.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 5.4e-09 64.7 82 40.2
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 9.2e-09 63.9 83 42.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 9.2e-09 63.9 28 92.9
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 9.2e-09 63.9 80 40.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.2e-08 63.5 83 42.2
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.6e-08 63.2 82 40.2
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.1e-08 62.8 82 40.2
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 2.1e-08 62.8 82 43.9
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.1e-08 62.8 82 37.8
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.7e-08 62.4 81 34.6
QL04p074452 Quercus lobata HOM05D001335 ORTHO05D001184 3.5e-08 62.0 77 40.3
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.5e-08 62.0 83 41.0
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.5e-08 62.0 83 41.0
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 4.6e-08 61.6 81 40.7
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 7.8e-08 60.8 82 39.0
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.0e-07 60.5 29 86.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.3e-07 60.1 81 42.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.0e-07 58.9 82 40.2
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 3.9e-07 58.5 81 39.5
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 5.1e-07 58.2 26 92.3
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 5.1e-07 58.2 26 92.3
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 5.1e-07 58.2 26 88.5
AagrBONN_evm.TU.Sc2ySwM_344.5147 Anthoceros agrestis HOM05D014933 ORTHO05D016523 6.6e-07 57.8 80 36.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.1e-06 57.0 82 36.6
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.1e-06 57.0 82 36.6
QL04p074383 Quercus lobata HOM05D001335 ORTHO05D001184 1.1e-06 57.0 77 37.7
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.1e-06 57.0 71 33.8
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.5e-06 56.6 71 33.8
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.9e-06 56.2 26 88.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.9e-06 56.2 26 88.5
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-06 56.2 25 92.0
Duzib116G0499 Durio zibethinus HOM05D000453 ORTHO05D000387 1.9e-06 56.2 78 35.9
QL10p022402 Quercus lobata HOM05D001335 ORTHO05D001184 2.5e-06 55.8 77 37.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 3.3e-06 55.5 82 35.4
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 3.3e-06 55.5 71 31.0
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 4.3e-06 55.1 26 84.6
Migut.K00837 Erythranthe guttata HOM05D000453 ORTHO05D000387 5.6e-06 54.7 83 36.1
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.6e-06 54.7 28 75.0


User provided reference genes

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