Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 4.5e-253 877.5 455 100.0
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 3.6e-194 681.8 439 78.4
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 2.4e-193 679.1 442 78.5
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.2e-192 676.8 437 78.7
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.4e-190 669.8 437 76.2
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 1.2e-189 666.8 437 77.8
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 2.1e-189 666.0 431 76.8
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 3.5e-189 665.2 436 75.9
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.0e-188 663.7 455 74.9
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 1.7e-188 662.9 440 76.8
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.1e-187 660.2 440 75.2
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.1e-187 660.2 443 75.4
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 1.9e-187 659.4 437 75.7
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 3.3e-187 658.7 427 76.3
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.1e-186 656.0 440 76.1
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 3.6e-186 655.2 436 73.6
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.2e-186 654.4 431 77.0
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.4e-185 653.3 437 74.8
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 4.0e-185 651.7 431 75.2
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 4.0e-185 651.7 440 75.7
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 5.8e-184 647.9 439 74.3
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 9.9e-184 647.1 455 73.2
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.7e-183 646.4 434 74.2
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.9e-183 645.6 437 73.2
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 3.8e-183 645.2 433 75.5
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 4.9e-183 644.8 458 72.5
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 8.4e-183 644.0 437 75.3
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 5.4e-182 641.3 435 75.6
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 9.3e-182 640.6 433 73.9
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.6e-181 639.8 431 75.2
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 2.1e-181 639.4 462 71.4
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.7e-181 639.0 438 72.1
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 4.6e-181 638.3 434 74.2
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 7.9e-181 637.5 429 75.1
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 7.9e-181 637.5 435 74.5
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.0e-180 637.1 433 74.4
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 1.8e-180 636.3 441 73.2
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 6.7e-180 634.4 437 73.0
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 1.1e-179 633.6 437 73.9
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 2.5e-179 632.5 441 74.1
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 9.6e-179 630.6 430 73.0
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 2.8e-178 629.0 435 74.0
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 3.7e-178 628.6 434 72.8
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 8.1e-178 627.5 453 71.3
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 8.1e-178 627.5 440 73.4
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.4e-177 626.7 439 71.3
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 2.4e-177 625.9 438 73.1
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 3.1e-177 625.5 455 71.9
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 6.9e-177 624.4 437 72.5
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.5e-176 623.2 423 73.0
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 3.4e-176 622.1 429 74.1
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 4.5e-176 621.7 437 73.0
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 5.8e-176 621.3 458 67.9
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 7.6e-176 620.9 443 73.4
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 2.9e-175 619.0 442 71.3
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-174 617.1 436 70.0
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.4e-174 615.9 445 70.8
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 3.2e-174 615.5 439 70.2
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.7e-173 612.5 434 69.6
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 2.7e-173 612.5 442 71.0
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.3e-172 610.1 429 69.9
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 5.6e-171 604.7 440 69.3
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.1e-169 600.5 446 70.2
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.4e-169 599.4 442 68.1
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 1.2e-168 597.0 433 71.1
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 4.9e-167 591.7 440 69.3
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.1e-166 590.5 457 69.1
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 1.9e-166 589.7 439 68.3
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 3.2e-166 589.0 441 68.7
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 5.5e-166 588.2 429 68.8
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-165 587.0 445 68.1
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 2.7e-165 585.9 437 68.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.0e-164 583.9 433 69.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.0e-164 583.9 433 69.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.8e-164 583.2 433 69.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.8e-164 583.2 433 69.1
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 1.8e-164 583.2 439 67.4
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 3.0e-164 582.4 445 66.3
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 5.1e-164 581.6 442 66.7
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 2.5e-163 579.3 432 67.6
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 2.5e-163 579.3 493 63.9
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 4.3e-163 578.6 441 68.5
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 6.3e-162 574.7 444 67.6
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 3.1e-161 572.4 432 67.1
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 9.0e-161 570.9 438 66.9
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.5e-160 570.1 435 67.8
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.1e-158 563.9 367 76.6
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 6.1e-157 558.1 453 65.8
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 1.3e-156 557.0 439 63.8
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.6e-152 542.7 449 63.7
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 7.7e-152 541.2 433 62.8
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 3.2e-150 535.8 385 70.6
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 9.4e-150 534.3 439 63.8
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 6.1e-149 531.6 431 64.7
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 1.4e-148 530.4 466 60.5
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 4.1e-145 518.8 339 77.9
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 3.8e-143 512.3 341 74.2
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 9.4e-142 507.7 344 72.4
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 4.7e-141 505.4 440 61.8
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 3.0e-140 502.7 430 62.1
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 6.3e-138 495.0 444 60.4
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 7.7e-136 488.0 438 59.8
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 8.8e-132 474.6 367 66.5
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-127 459.5 359 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 2.5e-126 456.4 435 53.3
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 8.8e-124 448.0 438 52.7
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 3.4e-123 446.0 438 51.1
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 4.5e-120 435.6 433 51.7
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.9e-118 430.3 607 44.0
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 3.3e-118 429.5 292 77.4
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 4.7e-117 425.6 330 67.3
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 1.7e-90 337.4 453 43.5
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.7e-90 336.3 308 53.2
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.4e-84 317.8 203 78.8
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 7.6e-83 312.0 286 60.8
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.5e-70 271.2 333 46.2
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.4e-68 264.6 213 62.4
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.0e-47 193.7 488 31.4
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.5e-46 190.7 161 55.9
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-39 168.3 204 46.1
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 9.4e-33 145.6 118 61.9
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 4.4e-30 136.7 102 65.7
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 2.0e-19 101.3 113 43.4
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.0e-18 99.0 92 60.9
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 2.2e-18 97.8 62 72.6
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 1.1e-17 95.5 99 45.5
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 2.0e-11 74.7 64 54.7
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 7.7e-11 72.8 41 82.9
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 3.6e-08 63.9 273 24.9
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 4.7e-08 63.5 40 77.5
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.2e-07 60.1 63 54.0
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 1.2e-06 58.9 53 58.5
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 3.4e-06 57.4 37 75.7


User provided reference genes

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