Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 6.1e-308 1060.4 737 100.0
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 3.7e-87 327.0 475 50.1
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 3.7e-71 273.9 343 48.7
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 1.6e-66 258.5 235 58.3
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 2.0e-64 251.5 359 44.3
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 2.8e-63 247.7 356 43.8
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.2e-61 242.3 367 43.1
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 5.9e-61 240.0 420 41.0
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.0e-60 239.2 381 42.3
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.0e-60 239.2 381 42.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.3e-60 238.8 326 45.7
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.5e-59 235.3 421 41.3
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 2.5e-59 234.6 270 50.0
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 5.5e-59 233.4 357 42.3
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.7e-56 223.4 482 37.1
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 9.8e-56 222.6 330 41.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.8e-55 221.1 432 37.0
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 9.1e-54 216.1 461 35.6
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 9.1e-54 216.1 493 39.1
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 4.5e-53 213.8 454 38.3
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 5.9e-53 213.4 263 48.7
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 7.7e-53 213.0 211 55.0
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 9.5e-51 206.1 184 55.4
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.6e-50 205.3 442 35.7
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.7e-50 203.8 395 38.7
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.5e-48 198.7 245 48.6
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 4.4e-48 197.2 249 48.2
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.7e-47 195.3 242 49.2
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.7e-47 195.3 430 36.5
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.9e-47 193.7 264 46.2
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 5.4e-46 190.3 235 51.5
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 7.0e-46 189.9 376 37.5
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 1.2e-45 189.1 460 35.2
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.0e-44 186.0 251 45.8
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 4.7e-42 177.2 419 32.9
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.0e-42 176.4 389 35.2
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.0e-41 176.0 432 34.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 2.3e-41 174.9 527 33.2
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 4.0e-41 174.1 451 35.0
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.8e-40 170.2 554 30.1
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 9.8e-40 169.5 203 46.8
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.7e-39 168.7 378 32.3
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 2.2e-39 168.3 309 35.6
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 2.9e-39 167.9 467 33.2
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 4.9e-39 167.2 370 35.1
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.3e-39 166.4 448 32.6
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 8.3e-39 166.4 465 32.3
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 8.3e-39 166.4 455 31.9
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.9e-38 165.2 216 45.8
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 4.1e-38 164.1 408 35.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.0e-38 163.3 291 38.8
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 7.0e-38 163.3 273 41.0
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-37 162.5 338 37.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.7e-37 161.4 338 37.9
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.0e-37 160.2 411 32.6
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 7.8e-37 159.8 229 42.4
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 7.8e-37 159.8 219 46.6
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 1.3e-36 159.1 455 33.2
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.7e-36 158.7 459 34.4
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 3.9e-36 157.5 259 42.1
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.9e-35 155.2 196 46.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.6e-35 153.7 409 31.3
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 9.5e-35 152.9 286 38.1
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 9.5e-35 152.9 524 31.5
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.6e-34 152.1 205 45.4
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.6e-34 152.1 505 30.9
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.6e-34 152.1 231 41.1
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 6.2e-34 150.2 210 44.3
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 6.2e-34 150.2 210 44.3
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 8.1e-34 149.8 290 37.2
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 8.1e-34 149.8 208 44.7
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.1e-33 149.4 270 38.9
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.4e-33 149.1 255 40.8
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 2.3e-33 148.3 414 32.4
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 2.3e-33 148.3 509 30.3
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.5e-32 145.6 277 38.3
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.5e-32 145.6 186 50.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.0e-32 145.2 257 37.7
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.0e-32 145.2 470 31.1
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 2.6e-32 144.8 464 29.7
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 4.9e-31 140.6 421 32.1
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 4.9e-31 140.6 245 37.6
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.9e-30 138.7 385 32.7
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 3.2e-30 137.9 465 29.9
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.2e-30 137.9 250 37.6
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.1e-29 135.2 451 31.3
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.5e-29 134.4 380 31.3
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.3e-28 132.5 513 28.5
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 8.6e-28 129.8 273 37.0
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.5e-27 129.0 547 29.6
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.5e-27 129.0 207 44.0
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 4.3e-27 127.5 209 36.8
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 9.5e-27 126.3 273 36.3
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 9.5e-27 126.3 408 31.1
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 9.5e-27 126.3 183 41.0
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-26 125.9 380 30.8
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.8e-26 124.8 302 35.1
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.7e-26 124.0 351 31.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 8.1e-26 123.2 503 28.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 8.1e-26 123.2 276 35.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.1e-25 122.9 244 34.8
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 2.3e-25 121.7 562 27.6
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 4.0e-25 120.9 212 37.7
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.0e-25 120.9 336 31.0
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.5e-24 119.0 214 37.4
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.5e-24 119.0 367 31.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 4.4e-24 117.5 188 38.8
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 4.4e-24 117.5 244 36.5
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 5.8e-24 117.1 201 38.8
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.6e-24 116.7 424 30.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.9e-23 114.0 211 37.4
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 8.4e-23 113.2 182 38.5
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.6e-21 109.0 474 28.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 2.3e-20 105.1 514 26.3
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.9e-19 102.1 296 32.8
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 9.6e-19 99.8 418 29.7
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 3.6e-18 97.8 296 32.8
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.5e-16 92.4 240 32.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.9e-15 88.2 226 33.6
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.5e-11 75.9 128 38.3
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 4.3e-11 74.3 177 33.3
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.8e-10 70.9 380 25.8
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 6.9e-09 67.0 126 36.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.7e-07 62.4 122 35.2
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 4.9e-07 60.8 413 26.4
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.4e-07 60.5 129 34.1
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.1e-06 59.7 118 36.4
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.4e-06 59.3 151 34.4
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.4e-06 58.5 142 30.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 2.4e-06 58.5 113 33.6
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.2e-06 58.2 115 33.0
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 5.4e-06 57.4 127 34.6
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.4e-06 57.4 167 29.9
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.4e-06 57.4 117 31.6
Sed0011246 Sechium edule HOM05D006278 ORTHO05D007526 5.4e-06 57.4 315 25.7
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 7.1e-06 57.0 115 34.8
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 7.1e-06 57.0 125 36.0
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.1e-06 57.0 130 31.5


User provided reference genes

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