Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 3.1e-60 235.0 119 100.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.9e-34 148.7 122 72.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.5e-33 144.4 115 71.3
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.1e-32 142.5 75 92.0
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.3e-31 139.0 124 66.9
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 3.0e-31 138.7 126 67.5
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 3.9e-31 138.3 124 66.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.9e-31 138.3 124 66.1
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.1e-31 137.9 125 68.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 5.1e-31 137.9 125 66.4
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 8.7e-31 137.1 124 66.1
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 8.7e-31 137.1 119 65.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.9e-30 136.0 75 89.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.5e-30 135.6 113 64.6
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 3.3e-30 135.2 78 83.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 4.3e-30 134.8 119 63.9
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 4.3e-30 134.8 89 78.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 5.7e-30 134.4 126 63.5
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 9.6e-30 133.7 105 66.7
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.3e-29 133.3 119 64.7
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.3e-29 133.3 119 60.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.6e-29 132.9 75 90.7
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.1e-29 132.5 97 71.1
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.8e-29 132.1 122 63.1
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.8e-29 132.1 122 62.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.7e-29 131.7 121 62.8
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 3.7e-29 131.7 122 62.3
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.7e-29 131.7 119 60.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.7e-29 131.7 125 62.4
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.7e-29 131.7 118 63.6
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.8e-29 131.3 122 63.1
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 6.2e-29 131.0 82 78.0
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 8.2e-29 130.6 121 61.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.2e-29 130.6 122 61.5
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 8.2e-29 130.6 75 84.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 8.2e-29 130.6 91 73.6
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.4e-28 129.8 74 85.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.4e-28 129.8 122 63.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-28 129.8 121 63.6
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-28 129.8 121 63.6
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.4e-28 129.8 75 82.7
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.8e-28 129.4 112 64.3
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.8e-28 129.4 118 62.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-28 129.4 82 79.3
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.8e-28 129.4 83 78.3
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.4e-28 129.0 121 58.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 2.4e-28 129.0 122 61.5
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.4e-28 129.0 122 63.1
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 3.1e-28 128.6 73 86.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.1e-28 128.6 111 64.9
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.1e-28 128.6 122 60.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.1e-28 128.6 75 80.0
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.1e-28 128.6 118 61.0
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.1e-28 128.3 124 64.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 4.1e-28 128.3 82 76.8
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.1e-28 128.3 75 82.7
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 5.3e-28 127.9 78 75.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.3e-28 127.9 122 60.7
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.9e-28 127.5 122 60.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 6.9e-28 127.5 75 78.7
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 9.0e-28 127.1 73 84.9
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 9.0e-28 127.1 73 84.9
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 9.0e-28 127.1 73 84.9
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.2e-27 126.7 74 85.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.5e-27 126.3 119 63.0
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.5e-27 126.3 75 82.7
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.5e-27 126.3 116 57.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.5e-27 126.3 84 72.6
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.5e-27 126.3 74 81.1
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.0e-27 125.9 115 61.7
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-27 125.9 73 84.9
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-27 125.9 115 61.7
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.0e-27 125.9 115 61.7
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 73 84.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.6e-27 125.6 75 82.7
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 76 80.3
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 4.5e-27 124.8 120 60.8
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 4.5e-27 124.8 78 74.4
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.5e-27 124.8 119 58.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 5.8e-27 124.4 119 61.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.0e-26 123.6 115 60.9
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.3e-26 123.2 73 82.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-26 123.2 78 76.9
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 125 60.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.3e-26 123.2 101 66.3
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.7e-26 122.9 119 58.0
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.7e-26 122.9 80 73.8
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 2.2e-26 122.5 73 80.8
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-26 122.5 118 58.5
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.2e-26 122.5 113 61.9
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.2e-26 122.5 115 59.1
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.9e-26 122.1 123 56.9
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.8e-26 121.7 123 54.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.0e-26 121.3 75 76.0
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.0e-26 121.3 75 76.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.0e-26 121.3 77 79.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 8.4e-26 120.6 126 57.9
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 8.4e-26 120.6 77 77.9
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.1e-25 120.2 118 55.9
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.9e-25 119.4 121 57.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 116 58.6
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 75 76.0
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 3.2e-25 118.6 118 55.9
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 4.2e-25 118.2 73 79.5
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.5e-25 117.9 120 54.2
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 5.5e-25 117.9 74 74.3
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 5.5e-25 117.9 116 57.8
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 9.3e-25 117.1 109 58.7
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 9.3e-25 117.1 116 57.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.2e-24 116.7 121 56.2
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.1e-24 115.9 68 83.8
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 5.1e-23 111.3 126 53.2
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 8.7e-23 110.5 153 49.7
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.9e-22 109.4 127 53.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.3e-22 108.6 99 63.6
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.3e-22 108.2 93 62.4
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.7e-22 107.8 77 71.4
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.7e-22 107.1 71 74.6
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 4.8e-21 104.8 73 67.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.5e-19 99.8 79 63.3
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 3.4e-19 98.6 91 60.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.4e-19 98.6 73 67.1
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.0e-18 97.1 81 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.3e-18 96.7 76 64.5
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.7e-18 96.3 98 56.1
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.9e-17 92.8 59 74.6
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 3.2e-17 92.0 71 63.4
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 3.2e-17 92.0 90 54.4
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-16 89.7 53 83.0
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.0e-15 87.0 56 75.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-14 82.4 49 79.6
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 5.7e-14 81.3 82 52.4
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.4e-12 75.9 47 74.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.1e-12 75.5 62 62.9
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.1e-12 75.1 102 46.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 9.1e-12 73.9 118 44.1
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 3.6e-08 62.0 100 41.0
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 3.3e-06 55.5 81 37.0


User provided reference genes

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