Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.8e-282 974.2 485 100.0
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.3e-186 656.8 501 70.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.3e-186 656.0 499 69.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.2e-184 650.2 503 70.0
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.9e-173 612.5 500 68.0
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 4.2e-172 608.6 481 68.4
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 5.3e-167 591.7 477 69.0
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.5e-166 590.1 496 65.3
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.6e-166 589.3 481 67.8
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 9.9e-166 587.4 503 64.2
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.9e-166 587.4 477 68.1
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.3e-165 587.0 477 68.1
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.3e-165 587.0 477 68.1
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.3e-165 587.0 477 68.1
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 4.9e-165 585.1 503 63.6
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.9e-162 575.5 477 67.3
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 6.7e-162 574.7 506 63.6
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.1e-161 573.9 498 62.9
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.3e-160 570.5 474 67.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 4.5e-158 562.0 525 61.5
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.6e-158 561.2 451 68.7
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.3e-157 560.5 503 63.6
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.2e-157 559.7 502 64.3
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.4e-157 557.8 502 62.2
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 3.2e-156 555.8 503 62.2
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-155 553.9 504 62.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.1e-155 553.1 502 62.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 3.5e-155 552.4 497 63.6
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 1.0e-154 550.8 498 62.9
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.9e-153 546.6 509 61.1
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 4.3e-153 545.4 504 60.3
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.8e-152 542.7 502 60.2
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 6.3e-152 541.6 492 61.8
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.4e-151 540.4 504 59.5
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 7.6e-150 534.6 504 58.1
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.7e-147 526.2 521 60.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.3e-146 523.9 506 59.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 8.7e-146 521.2 503 57.9
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-144 517.3 484 60.5
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 4.1e-143 512.3 514 57.6
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.5e-142 510.4 481 59.9
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.5e-142 510.4 507 57.0
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.8e-141 505.8 419 64.0
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.8e-141 505.8 444 62.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 5.0e-141 505.4 482 58.1
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 7.9e-139 498.0 505 55.6
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.0e-138 497.7 500 57.6
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 3.0e-138 496.1 491 57.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 2.6e-137 493.0 487 56.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.2e-136 490.0 522 56.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 4.8e-136 488.8 506 56.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.8e-136 488.8 483 57.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 3.4e-134 482.6 479 57.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 4.5e-134 482.3 482 57.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 7.7e-134 481.5 377 67.1
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 2.9e-133 479.6 483 56.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.4e-132 477.2 484 57.0
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.4e-130 470.7 605 50.1
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 6.7e-130 468.4 375 66.1
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 9.7e-129 464.5 494 56.5
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.7e-128 463.8 487 53.8
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.1e-127 459.5 408 61.0
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.2e-126 457.6 484 55.4
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.6e-126 457.2 485 56.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.6e-123 446.0 377 63.7
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.4e-122 444.1 531 51.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 4.0e-122 442.6 494 54.9
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.1e-119 434.5 491 54.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.1e-119 434.5 388 60.1
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-119 434.1 483 53.6
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 5.3e-119 432.2 485 50.5
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 7.7e-118 428.3 504 51.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 8.5e-117 424.9 499 52.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.2e-116 422.5 498 50.6
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 2.1e-115 420.2 506 53.0
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 3.0e-114 416.4 490 50.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 2.6e-113 413.3 483 52.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 5.7e-113 412.1 487 50.9
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.0e-109 401.4 476 50.0
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.3e-109 401.0 494 50.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.9e-108 397.1 408 58.6
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.1e-103 381.3 504 47.4
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.4e-103 380.9 389 57.3
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.5e-102 376.3 388 58.5
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 6.6e-101 372.1 456 48.9
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.5e-100 370.2 492 49.0
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 3.6e-99 366.3 488 47.7
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 2.6e-97 360.1 432 50.9
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 5.4e-95 352.4 522 45.8
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 7.0e-95 352.1 494 45.7
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.3e-93 347.1 486 45.7
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 4.3e-92 342.8 324 59.3
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 9.5e-92 341.7 451 47.9
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.6e-91 340.9 490 46.3
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 3.4e-89 333.2 382 53.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 7.5e-89 332.0 397 52.6
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.3e-88 331.3 491 45.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 7.0e-87 325.5 396 52.5
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.7e-86 323.6 405 48.4
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 7.8e-86 322.0 446 45.3
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.3e-85 321.2 530 41.1
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.1e-84 318.2 412 50.7
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.5e-84 317.8 390 49.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 2.8e-83 313.5 411 49.6
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 4.0e-82 309.7 404 51.0
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 3.4e-81 306.6 395 50.6
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 7.5e-81 305.4 395 50.1
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.9e-80 302.8 486 42.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.1e-79 301.6 448 45.3
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.4e-79 301.2 431 44.5
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 3.2e-79 300.1 414 48.8
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 3.2e-79 300.1 364 50.0
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.2e-75 288.1 450 43.8
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 5.8e-73 279.3 419 45.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.2e-72 277.3 391 47.6
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 8.4e-64 248.8 389 44.0
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.1e-62 244.2 490 39.0
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.0e-61 240.4 295 50.2
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.2e-56 224.2 288 47.9
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 6.4e-56 222.6 220 52.3
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 5.4e-55 219.5 456 40.1
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 2.1e-54 217.6 343 40.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 8.1e-51 205.7 204 52.0
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.5e-49 201.4 227 46.7
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.9e-44 184.5 108 83.3
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.1e-38 164.5 374 35.6
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 3.5e-38 163.7 236 44.1
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.3e-36 157.1 399 34.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 2.6e-33 147.5 133 50.4
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 7.7e-33 146.0 256 43.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.7e-32 144.8 265 37.4
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-31 142.1 227 37.0
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.3e-29 134.4 436 30.7
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.6e-25 120.9 116 56.0
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 2.9e-24 117.5 106 46.2
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 6.5e-24 116.3 433 27.3
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.2e-22 112.1 163 42.3
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.3e-21 107.8 68 79.4
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 9.4e-07 59.3 71 52.1
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 2.7e-06 57.8 110 37.3
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 4.7e-06 57.0 52 61.5


User provided reference genes

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