Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1813 Cannabis sativa HOM05D007663 ORTHO05D009455 1.6e-66 256.9 173 100.0
CANSAT56G3657 Cannabis sativa HOM05D007663 ORTHO05D009455 7.0e-46 188.3 251 63.7
QL08p063638 Quercus lobata HOM05D007663 ORTHO05D009455 4.4e-24 115.9 163 61.3
Cfa001285 Carpinus fangiana HOM05D000718 ORTHO05D006723 7.5e-24 115.2 163 66.9
Rhsim03G0146000 Rhododendron simsii HOM05D007663 ORTHO05D009455 1.7e-23 114.0 170 58.2
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 1.1e-22 111.3 136 67.6
Manes.11G152042 Manihot esculenta HOM05D007663 ORTHO05D009455 4.1e-22 109.4 137 75.2
Manes.11G152127 Manihot esculenta HOM05D007663 ORTHO05D009455 7.0e-22 108.6 135 75.6
GSVIVG01032765001 Vitis vinifera HOM05D007663 ORTHO05D009455 9.2e-22 108.2 153 43.8
Haze_17265 Corylus avellana HOM05D007663 ORTHO05D009455 2.0e-21 107.1 174 62.1
CANSAT56G2616 Cannabis sativa HOM05D007663 ORTHO05D009455 1.0e-20 104.8 119 72.3
Ciclev10031427m.g Citrus clementina HOM05D007663 ORTHO05D009455 1.3e-20 104.4 173 61.8
Dinv21764 Davidia involucrata HOM05D007663 ORTHO05D009455 1.3e-20 104.4 170 61.8
Lsat_1_v5_gn_2_124440 Lactuca sativa HOM05D007663 ORTHO05D009455 2.3e-20 103.6 164 53.0
TWI73G0671 Tripterygium wilfordii HOM05D007663 ORTHO05D009455 3.0e-20 103.2 153 65.4
MBI15_g12399_MAGBIO Magnolia biondii HOM05D007663 ORTHO05D009455 6.6e-20 102.1 136 61.0
Manes.11G152141 Manihot esculenta HOM05D007663 ORTHO05D009455 6.6e-20 102.1 135 74.1
Migut.F00643 Erythranthe guttata HOM05D007663 ORTHO05D009455 1.5e-19 100.9 164 54.9
ECA238G2021 Erigeron canadensis HOM05D007663 ORTHO05D009455 1.9e-19 100.5 171 54.4
Cpa.g.sc65.132 Carica papaya HOM05D007663 ORTHO05D009455 3.3e-19 99.8 139 68.3
HanXRQChr14g0459391 Helianthus annuus HOM05D007663 ORTHO05D009455 5.6e-19 99.0 164 53.0
Manes.07G064632 Manihot esculenta HOM05D007663 ORTHO05D009455 1.2e-18 97.8 133 74.4
vmacro17693 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 2.1e-18 97.1 136 64.0
Manes.07G133012 Manihot esculenta HOM05D007663 ORTHO05D009455 2.8e-18 96.7 135 71.9
Nn2g10961 Nelumbo nucifera HOM05D007663 ORTHO05D009455 4.7e-18 95.9 136 61.0
Duzib128G1882 Durio zibethinus HOM05D007663 ORTHO05D009455 6.2e-18 95.5 135 68.9
Cc02_g05740 Coffea canephora HOM05D007663 ORTHO05D009455 8.0e-18 95.1 132 52.3
Nitab4.5_0000409g0130 Nicotiana tabacum HOM05D007663 ORTHO05D009455 2.3e-17 93.6 136 58.8
CSS0001014 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 6.8e-17 92.0 172 51.7
CSS0017188 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 6.8e-17 92.0 172 51.7
SalBow3G1672 Salvia bowleyana HOM05D007663 ORTHO05D009455 6.8e-17 92.0 136 59.6
Manes.07G134100 Manihot esculenta HOM05D007663 ORTHO05D009455 1.5e-16 90.9 135 70.4
PGSC0003DMG400027722 Solanum tuberosum HOM05D007663 ORTHO05D009455 2.6e-16 90.1 245 39.2
CAN.G156.14 Capsicum annuum HOM05D007663 ORTHO05D009455 3.4e-16 89.7 153 52.9
Manes.11G152170 Manihot esculenta HOM05D007663 ORTHO05D009455 4.4e-16 89.4 135 70.4
Manes.11G152176 Manihot esculenta HOM05D007663 ORTHO05D009455 4.4e-16 89.4 135 70.4
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 5.8e-16 89.0 131 67.2
CiPaw.01G301100 Carya illinoinensis HOM05D007663 ORTHO05D009455 7.5e-16 88.6 158 62.0
Solyc03g095860.3 Solanum lycopersicum HOM05D007663 ORTHO05D009455 2.2e-15 87.0 162 50.6
Zm00001eb368510 Zea mays HOM05D007663 ORTHO05D009455 8.3e-15 85.1 166 39.2
Sopen03g025840 Solanum pennellii HOM05D007663 ORTHO05D009455 1.4e-14 84.3 141 52.5
Os01g0829100 Oryza sativa ssp. japonica HOM05D007663 ORTHO05D009455 1.9e-14 84.0 134 42.5
Gohir.A05G331600 Gossypium hirsutum HOM05D007663 ORTHO05D009455 4.1e-14 82.8 131 64.9
Gohir.D04G070200 Gossypium hirsutum HOM05D007663 ORTHO05D009455 5.4e-14 82.4 131 65.6
Gorai.012G078700 Gossypium raimondii HOM05D007663 ORTHO05D009455 5.4e-14 82.4 131 65.6
Manes.07G133005 Manihot esculenta HOM05D007663 ORTHO05D009455 1.6e-13 80.9 191 51.8
Sabra10G0142400 Salix brachista HOM05D007663 ORTHO05D009455 1.0e-12 78.2 177 54.8
MSTRG.27307 Avicennia marina HOM05D007663 ORTHO05D009455 8.6e-12 75.1 58 63.8
Lalb_Chr04g0250441 Lupinus albus HOM05D007663 ORTHO05D009455 8.6e-12 75.1 170 35.3
Oeu059718.1 Olea europaea HOM05D007663 ORTHO05D009455 3.3e-11 73.2 57 59.6
arahy.Tifrunner.gnm1.ann1.CJK2YY Arachis hypogaea HOM05D007663 ORTHO05D009455 1.2e-10 71.2 171 32.7
arahy.Tifrunner.gnm1.ann1.QDW8X7 Arachis hypogaea HOM05D007663 ORTHO05D009455 1.2e-10 71.2 171 32.7
vmacro06952 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 4.7e-10 69.3 143 56.6
DCAR_010462 Daucus carota HOM05D007663 ORTHO05D009455 6.2e-10 68.9 135 51.1
Prupe.2G254900 Prunus persica HOM05D007663 ORTHO05D009455 1.4e-09 67.8 172 33.7
RcHm_v2.0_Chr1g0370871 Rosa chinensis HOM05D007663 ORTHO05D009455 4.0e-09 66.2 177 32.2
Aqoxy2G00815 Aquilegia oxysepala HOM05D007663 ORTHO05D009455 6.8e-09 65.5 169 51.5
SGA_v2.0_scaffold44G16663 Striga asiatica HOM05D007663 ORTHO05D009455 1.5e-08 64.3 185 28.6
PGR044G1292 Punica granatum HOM05D007663 ORTHO05D009455 3.4e-08 63.2 168 31.5
DCAR_013480 Daucus carota HOM05D006239 ORTHO05D008159 4.4e-08 62.8 135 52.6
Nitab4.5_0001222g0010 Nicotiana tabacum HOM05D007663 ORTHO05D009455 4.4e-08 62.8 135 55.6
MD12G1008200 Malus domestica HOM05D006239 ORTHO05D008159 2.2e-07 60.5 130 29.2
Atru.chr12.76 Acer truncatum HOM05D007663 ORTHO05D009455 2.9e-07 60.1 66 43.9
Manes.05G009249 Manihot esculenta HOM05D007663 ORTHO05D009455 2.9e-07 60.1 35 77.1
Sopen09g029120 Solanum pennellii HOM05D007464 ORTHO05D009388 2.9e-07 60.1 149 41.6
Nitab4.5_0008256g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 4.9e-07 59.3 134 42.5
Ca_05987_v3 Cicer arietinum L. HOM05D007663 ORTHO05D009455 8.3e-07 58.5 170 31.8
Manes.07G064566 Manihot esculenta HOM05D000718 ORTHO05D009455 8.3e-07 58.5 60 56.7
Medtr8g056020 Medicago truncatula HOM05D007663 ORTHO05D009455 8.3e-07 58.5 161 32.3
Thecc.10G011700 Theobroma cacao HOM05D007663 ORTHO05D009455 8.3e-07 58.5 34 70.6
Solyc09g074280.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 1.1e-06 58.2 133 40.6
Nitab4.5_0008984g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.4e-06 57.8 134 43.3
Sopen09g029110 Solanum pennellii HOM05D007464 ORTHO05D009388 1.4e-06 57.8 133 40.6
Duzib128G1513 Durio zibethinus HOM05D006239 ORTHO05D008159 1.9e-06 57.4 136 49.3
FvH4_7g24970 Fragaria vesca HOM05D007663 ORTHO05D009455 1.9e-06 57.4 173 30.6
FAN06G1368 Fragaria x ananassa HOM05D007663 ORTHO05D009455 1.9e-06 57.4 173 30.6
Manes.11G152105 Manihot esculenta HOM05D007663 ORTHO05D009455 1.9e-06 57.4 34 76.5
Manes.11G152184 Manihot esculenta HOM05D007663 ORTHO05D009455 1.9e-06 57.4 34 76.5
Manes.11G152190 Manihot esculenta HOM05D007663 ORTHO05D009455 1.9e-06 57.4 34 76.5
TWI32G0101 Tripterygium wilfordii HOM05D006239 ORTHO05D008159 1.9e-06 57.4 130 29.2
FAN01G2334 Fragaria x ananassa HOM05D007663 ORTHO05D009455 2.4e-06 57.0 173 30.6
TAR623G1602 Trochodendron aralioides HOM05D006239 ORTHO05D008159 2.4e-06 57.0 133 27.8
Gohir.D12G033400 Gossypium hirsutum HOM05D006239 ORTHO05D008159 4.1e-06 56.2 136 50.0
HanXRQChr13g0398581 Helianthus annuus HOM05D006239 ORTHO05D008159 5.4e-06 55.8 133 26.3
HanXRQChr13g0398991 Helianthus annuus HOM05D006239 ORTHO05D008159 5.4e-06 55.8 133 26.3
Potri.010G185200 Populus trichocarpa HOM05D007663 ORTHO05D009455 5.4e-06 55.8 44 63.6
PGSC0003DMG400034780 Solanum tuberosum HOM05D007464 ORTHO05D009388 5.4e-06 55.8 133 41.4
PGSC0003DMG401003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 5.4e-06 55.8 133 40.6
PGSC0003DMG402003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 5.4e-06 55.8 133 41.4
Actinidia37802 Actinidia chinensis HOM05D006239 ORTHO05D008159 9.2e-06 55.1 127 43.3
FAN28G0797 Fragaria x ananassa HOM05D006239 ORTHO05D008159 9.2e-06 55.1 131 28.2


User provided reference genes

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