Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 4.7e-74 281.2 149 100.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 9.8e-48 193.7 131 77.1
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 3.7e-47 191.8 132 75.8
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 6.4e-47 191.0 157 69.4
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 1.4e-46 189.9 146 71.9
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 2.4e-46 189.1 129 78.3
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 7.0e-46 187.6 129 76.7
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 7.0e-46 187.6 129 76.7
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 9.2e-46 187.2 129 78.3
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 2.7e-45 185.7 127 76.4
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.5e-45 185.3 142 70.4
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 4.6e-45 184.9 129 75.2
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 4.6e-45 184.9 133 73.7
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 2.3e-44 182.6 129 76.0
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 3.0e-44 182.2 149 67.1
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 5.0e-44 181.4 130 73.1
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 5.0e-44 181.4 139 71.2
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 6.6e-44 181.0 128 75.8
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 6.6e-44 181.0 136 73.5
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 8.6e-44 180.6 130 72.3
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 3.3e-43 178.7 129 76.0
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 9.5e-43 177.2 114 78.9
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 6.2e-42 174.5 130 72.3
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 6.2e-42 174.5 133 69.9
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 8.1e-42 174.1 131 72.5
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 8.1e-42 174.1 145 66.2
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 1.1e-41 173.7 135 67.4
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 1.1e-41 173.7 115 76.5
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 1.4e-41 173.3 129 72.9
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 1.4e-41 173.3 131 71.8
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 4.0e-41 171.8 131 71.8
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 8.9e-41 170.6 151 62.9
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 8.9e-41 170.6 128 69.5
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 1.5e-40 169.9 152 61.8
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 2.0e-40 169.5 132 70.5
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 2.6e-40 169.1 129 70.5
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 3.4e-40 168.7 160 65.0
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 4.4e-40 168.3 129 69.8
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 7.5e-40 167.5 138 65.9
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 9.9e-40 167.2 152 61.2
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.3e-39 166.8 134 64.9
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 4.9e-39 164.9 145 65.5
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 6.4e-39 164.5 139 66.9
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 6.4e-39 164.5 140 67.1
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 6.4e-39 164.5 133 69.2
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 8.3e-39 164.1 140 66.4
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 8.3e-39 164.1 140 66.4
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 8.3e-39 164.1 140 66.4
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 8.3e-39 164.1 140 66.4
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 8.3e-39 164.1 140 66.4
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 1.1e-38 163.7 112 75.0
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 1.1e-38 163.7 112 75.9
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 1.4e-38 163.3 116 72.4
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 1.4e-38 163.3 127 69.3
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 2.4e-38 162.5 127 70.9
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 3.2e-38 162.2 137 67.2
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 3.2e-38 162.2 142 65.5
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 4.1e-38 161.8 146 65.1
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 4.1e-38 161.8 140 64.3
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 4.1e-38 161.8 115 69.6
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 4.1e-38 161.8 138 62.3
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 4.1e-38 161.8 148 60.1
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 5.4e-38 161.4 146 64.4
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 5.4e-38 161.4 120 74.2
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 5.4e-38 161.4 153 56.9
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 1.2e-37 160.2 131 64.9
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 2.1e-37 159.5 151 60.3
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 1.3e-36 156.8 150 59.3
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 2.3e-36 156.0 149 58.4
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 2.3e-36 156.0 104 75.0
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 1.9e-35 152.9 129 64.3
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 2.5e-35 152.5 115 67.8
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 9.5e-35 150.6 136 58.8
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.1e-34 149.4 131 61.1
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.2e-32 143.7 97 71.1
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 2.0e-32 142.9 151 60.9
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.7e-31 139.8 130 59.2
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 1.6e-29 133.3 122 63.9
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 2.1e-29 132.9 115 60.0
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 2.1e-29 132.9 109 67.0
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 1.7e-28 129.8 104 68.3
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 1.9e-27 126.3 110 68.2
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 5.6e-27 124.8 114 62.3
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 5.6e-27 124.8 139 56.8
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 5.6e-27 124.8 99 71.7
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 5.6e-27 124.8 110 63.6
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 7.3e-27 124.4 102 68.6
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.8e-26 122.5 100 69.0
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 4.7e-26 121.7 124 51.6
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 1.7e-23 113.2 99 64.6
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 3.8e-23 112.1 116 50.9
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 9.3e-22 107.5 125 47.2
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 4.6e-21 105.1 120 55.0
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.7e-20 103.2 71 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 3.9e-20 102.1 145 42.8
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 1.1e-19 100.5 177 41.8
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 9.6e-19 97.4 56 82.1
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 4.8e-18 95.1 112 47.3
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 2.6e-16 89.4 115 47.0
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 1.9e-14 83.2 137 38.0
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 4.2e-14 82.0 127 38.6
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 1.2e-13 80.5 102 49.0
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 1.5e-11 73.6 70 55.7
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 2.9e-07 59.3 115 38.3
FAN16G2470 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.1e-06 57.4 54 66.7
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 1.4e-06 57.0 63 58.7


User provided reference genes

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