Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 3.6e-279 964.1 448 100.0
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.6e-242 840.9 448 85.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 2.5e-240 835.1 445 86.1
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.5e-240 835.1 442 85.7
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 2.5e-240 835.1 438 87.0
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.3e-240 834.7 446 85.4
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 5.6e-240 833.9 442 85.5
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 3.7e-239 831.2 445 84.5
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.1e-238 829.7 434 86.6
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.1e-238 829.7 431 87.0
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 1.8e-238 828.9 433 86.6
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 1.8e-238 828.9 431 86.8
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 3.1e-238 828.2 435 86.4
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 3.1e-238 828.2 453 84.1
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.3e-238 827.4 434 86.4
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 6.9e-238 827.0 431 86.5
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 3.4e-237 824.7 443 84.7
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.2e-236 822.0 445 82.9
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.9e-236 821.6 465 82.6
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 4.9e-236 820.8 436 85.3
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 6.4e-236 820.5 439 85.4
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.9e-235 818.9 447 82.1
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.2e-235 818.1 435 85.7
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 3.2e-235 818.1 432 84.5
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 3.2e-235 818.1 445 82.7
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.5e-235 817.4 444 84.5
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 1.2e-234 816.2 434 85.3
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 2.1e-234 815.5 434 84.3
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.5e-234 814.7 432 84.5
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.3e-233 812.8 432 85.4
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 3.0e-233 811.6 434 85.5
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 3.9e-233 811.2 434 84.8
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 5.1e-233 810.8 448 82.8
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 6.7e-233 810.4 432 84.5
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 8.7e-233 810.1 436 83.9
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.1e-232 809.7 445 81.3
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 2.5e-232 808.5 443 82.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 4.3e-232 807.7 439 84.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 4.3e-232 807.7 432 85.2
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 7.4e-232 807.0 439 84.1
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 7.4e-232 807.0 438 83.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 9.6e-232 806.6 443 81.5
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.6e-231 805.8 436 83.9
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 8.2e-231 803.5 431 84.0
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.1e-230 803.1 438 83.1
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.8e-230 802.4 475 78.5
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.8e-230 802.4 438 83.1
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 3.1e-230 801.6 432 83.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 4.0e-230 801.2 434 83.9
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 5.3e-230 800.8 438 82.4
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 5.3e-230 800.8 428 84.8
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 5.3e-230 800.8 443 82.2
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 9.0e-230 800.0 433 82.4
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 4.5e-229 797.7 437 82.8
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 4.5e-229 797.7 437 82.8
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 5.8e-229 797.3 431 84.0
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 2.2e-228 795.4 432 84.0
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.9e-228 795.0 476 76.7
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 6.5e-228 793.9 433 83.1
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 8.4e-228 793.5 435 83.2
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 1.4e-227 792.7 435 83.0
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.4e-227 792.7 432 83.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.4e-227 792.7 432 83.3
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.4e-227 792.7 477 76.9
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.4e-227 792.7 477 76.9
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 3.2e-227 791.6 437 82.4
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 3.2e-227 791.6 443 80.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 4.2e-227 791.2 437 82.6
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 7.1e-227 790.4 437 82.4
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 7.1e-227 790.4 443 81.9
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.6e-226 789.3 443 79.9
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.6e-226 789.3 435 81.8
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 2.1e-226 788.9 445 80.4
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.7e-226 788.5 438 81.5
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 4.6e-226 787.7 432 82.6
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.0e-225 786.6 433 82.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 1.3e-225 786.2 438 80.6
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 2.3e-225 785.4 433 82.4
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 3.0e-225 785.0 442 80.8
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 5.1e-225 784.3 439 81.3
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 5.3e-222 774.2 435 81.1
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.2e-221 773.1 445 78.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 9.4e-219 763.5 457 78.6
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.2e-218 763.1 441 79.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 5.1e-217 757.7 436 78.2
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 5.3e-214 747.7 439 77.4
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 5.5e-211 737.6 435 77.2
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.9e-209 731.5 476 73.3
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.5e-208 729.6 442 74.9
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 4.4e-208 728.0 457 73.3
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 4.1e-206 721.5 435 75.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 2.2e-204 715.7 379 85.8
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 5.2e-201 704.5 397 79.6
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 2.6e-200 702.2 377 84.1
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.5e-192 676.4 435 71.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.9e-187 659.4 441 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 7.2e-187 657.5 420 70.0
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.3e-185 652.5 406 76.1
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 4.0e-185 651.7 448 70.1
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 8.8e-185 650.6 435 70.6
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 4.1e-174 615.1 333 82.3
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.5e-171 606.7 302 90.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 3.3e-171 605.5 436 64.0
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.4e-166 589.3 303 86.8
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.6e-162 576.6 447 61.5
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 7.5e-160 567.8 293 86.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.9e-155 553.1 377 70.8
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.5e-155 552.7 462 57.6
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 3.0e-132 476.1 271 80.4
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.2e-85 321.2 196 78.6
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.5e-70 269.2 132 88.6
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 4.7e-69 266.2 158 77.2
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 5.2e-68 262.7 362 45.0
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 1.2e-67 261.5 219 59.4
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 4.8e-66 256.1 133 85.0
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 6.3e-66 255.8 178 66.3
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 8.3e-66 255.4 216 63.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 5.0e-63 246.1 120 91.7
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 5.9e-56 222.6 132 76.5
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 4.7e-53 213.0 131 74.0
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 9.8e-51 205.3 119 79.0
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.0e-47 195.3 116 72.4
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 4.3e-46 189.9 249 47.4
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.2e-33 147.1 86 73.3
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.4e-26 122.5 98 60.2
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.3e-25 119.0 70 71.4
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 2.7e-24 117.5 55 92.7
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.3e-23 114.4 178 41.0
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 4.3e-22 110.2 61 77.0
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.3e-18 98.6 108 46.3
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.3e-15 87.8 68 61.8
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 7.1e-09 66.2 43 67.4
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.5e-06 57.8 55 56.4


User provided reference genes

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