Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 6.5e-120 434.1 224 100.0
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.2e-54 217.2 115 92.2
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 4.2e-50 202.2 115 83.5
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 4.6e-49 198.7 115 84.3
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 6.2e-46 188.3 115 73.0
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.4e-45 187.2 115 73.9
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 5.3e-45 185.3 115 74.8
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 5.3e-45 185.3 115 73.9
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.3e-45 185.3 115 73.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 6.9e-45 184.9 115 77.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.2e-44 184.1 115 73.9
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.0e-44 183.3 115 73.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.6e-44 183.0 115 74.8
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 2.6e-44 183.0 115 73.0
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 3.4e-44 182.6 115 73.9
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.4e-44 182.6 115 73.0
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 4.4e-44 182.2 115 74.8
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 4.4e-44 182.2 115 73.9
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 4.4e-44 182.2 115 69.6
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 7.6e-44 181.4 115 71.3
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 7.6e-44 181.4 115 73.9
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 7.6e-44 181.4 115 73.9
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 7.6e-44 181.4 115 72.2
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 9.9e-44 181.0 141 63.1
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.3e-43 180.6 115 72.2
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 1.3e-43 180.6 115 71.3
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.3e-43 180.6 115 73.0
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.3e-43 180.6 115 73.9
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.7e-43 180.3 115 71.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.2e-43 179.9 115 73.0
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.2e-43 179.9 115 73.9
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 2.9e-43 179.5 115 73.0
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 3.8e-43 179.1 116 71.6
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 3.8e-43 179.1 115 73.0
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 3.8e-43 179.1 115 72.2
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 4.9e-43 178.7 115 71.3
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 6.4e-43 178.3 115 71.3
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 6.4e-43 178.3 115 71.3
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 6.4e-43 178.3 115 70.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 6.4e-43 178.3 115 70.4
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 6.4e-43 178.3 115 71.3
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 8.4e-43 177.9 115 72.2
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 8.4e-43 177.9 116 72.4
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 8.4e-43 177.9 115 71.3
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-42 177.6 115 68.7
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.1e-42 177.6 115 71.3
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.1e-42 177.6 115 71.3
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.1e-42 177.6 115 70.4
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.1e-42 177.6 115 70.4
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.4e-42 177.2 115 68.7
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.4e-42 177.2 115 69.6
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.9e-42 176.8 115 70.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.9e-42 176.8 115 70.4
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 2.4e-42 176.4 115 69.6
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.2e-42 176.0 115 71.3
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 3.2e-42 176.0 116 71.6
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 3.2e-42 176.0 115 71.3
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 4.2e-42 175.6 116 69.8
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 4.2e-42 175.6 115 67.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 4.2e-42 175.6 115 70.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 5.4e-42 175.3 115 71.3
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 5.4e-42 175.3 115 72.2
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.4e-42 175.3 115 69.6
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.1e-42 174.9 115 69.6
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 9.3e-42 174.5 115 71.3
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.6e-41 173.7 115 67.8
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.6e-41 173.7 115 68.7
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.6e-41 173.7 117 71.8
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.1e-41 173.3 115 69.6
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 2.1e-41 173.3 115 67.8
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.7e-41 172.9 115 67.8
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 3.5e-41 172.6 116 69.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.5e-41 172.6 115 68.7
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 3.5e-41 172.6 115 68.7
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.5e-41 172.6 115 68.7
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 7.9e-41 171.4 115 68.7
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 1.0e-40 171.0 115 70.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.3e-40 170.6 115 67.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.7e-40 170.2 116 66.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 3.0e-40 169.5 117 70.1
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.9e-40 169.1 117 69.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.9e-40 169.1 117 69.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 5.1e-40 168.7 115 67.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 5.1e-40 168.7 115 67.0
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 6.6e-40 168.3 116 68.1
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 8.7e-40 167.9 116 65.5
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 8.7e-40 167.9 115 66.1
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 8.7e-40 167.9 117 68.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.1e-39 167.5 116 64.7
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.1e-39 167.5 117 69.2
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.9e-39 166.8 115 66.1
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.9e-39 166.8 117 69.2
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-39 166.8 117 68.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.5e-39 166.4 117 68.4
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 3.3e-39 166.0 118 67.8
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 3.3e-39 166.0 118 67.8
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 3.3e-39 166.0 118 67.8
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 3.3e-39 166.0 108 69.4
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 3.3e-39 166.0 108 71.3
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.4e-39 164.9 115 63.5
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 9.6e-39 164.5 118 66.9
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.6e-38 163.7 117 66.7
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 2.1e-38 163.3 116 69.0
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.1e-38 163.3 117 65.8
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 2.1e-38 163.3 108 68.5
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.8e-38 162.9 116 69.0
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 3.6e-38 162.5 118 65.3
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 4.8e-38 162.2 115 66.1
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.8e-38 162.2 117 66.7
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 6.2e-38 161.8 118 65.3
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 6.2e-38 161.8 117 65.8
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 8.1e-38 161.4 117 65.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 8.1e-38 161.4 122 60.7
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.4e-37 160.6 117 65.8
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.4e-37 160.6 117 65.8
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.4e-37 160.6 115 64.3
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.4e-37 160.6 115 64.3
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.8e-37 160.2 118 65.3
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.1e-37 159.5 120 61.7
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.1e-37 159.5 120 61.7
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 4.0e-37 159.1 117 65.0
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 4.0e-37 159.1 115 62.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.3e-37 158.7 117 66.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.3e-37 158.7 116 61.2
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 6.9e-37 158.3 102 69.6
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.2e-36 157.5 108 64.8
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.5e-36 157.1 117 65.8
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.0e-36 156.8 117 64.1
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.0e-36 156.8 117 64.1
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.0e-36 156.8 116 64.7
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 3.4e-36 156.0 119 60.5
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 3.4e-36 156.0 119 60.5
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 3.4e-36 156.0 119 60.5
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 5.8e-36 155.2 115 60.0
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 7.6e-36 154.8 113 66.4
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.6e-36 154.8 113 64.6
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.9e-35 152.9 116 63.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.8e-35 152.5 105 65.7
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 6.4e-35 151.8 117 64.1
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.1e-34 151.0 115 60.0
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.1e-34 151.0 115 60.0
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.4e-34 150.6 115 57.4
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 2.4e-34 149.8 110 63.6
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 4.2e-34 149.1 117 59.8
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 7.1e-34 148.3 115 60.0
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.3e-34 147.9 107 62.6
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.6e-33 147.1 115 61.7
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 3.5e-33 146.0 115 57.4
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 7.9e-33 144.8 115 58.3
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-32 143.7 116 59.5
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 3.3e-31 139.4 116 57.8
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 8.1e-30 134.8 116 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 6.5e-27 125.2 115 51.3
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.9e-26 123.6 106 56.6
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.9e-26 123.6 124 46.8
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 3.2e-26 122.9 124 46.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.8e-24 117.1 80 60.0
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.0e-24 116.3 116 50.0
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 2.4e-21 106.7 116 49.1
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.0e-21 104.8 101 51.5
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.3e-19 100.9 124 40.3
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 2.3e-16 90.1 68 60.3
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.0e-16 89.7 141 39.0
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 3.0e-16 89.7 116 42.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 6.7e-16 88.6 51 74.5
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.6e-14 84.0 157 34.4
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.3e-14 82.0 55 63.6


User provided reference genes

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